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mRNABench family summaries and variant tables share experiments

Tables 5/6 provide variant-level details of the same probing experiment set summarized by Table 2. These tables are not independent repetitions; no exact selected variant is inferred.

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Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.field evidence_experiment_set_id Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ Appendix D (APP4): Table 2 displays the best overall model per family; Tables 5/6 list each variant Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
attributes.source_locator Appendix D (APP4): Table 2 displays the best overall model per family; Tables 5/6 list each variant Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ Appendix D (APP4): Table 2 displays the best overall model per family; Tables 5/6 list each variant Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
description Tables 5/6 provide variant-level details of the same probing experiment set summarized by Table 2. These tables are not independent repetitions; no exact selected variant is inferred. Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ Appendix D (APP4): Table 2 displays the best overall model per family; Tables 5/6 list each variant Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Relationship: subject evaluation-lit-009 Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ Appendix D (APP4): Table 2 displays the best overall model per family; Tables 5/6 list each variant Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `links:subject:evaluation-lit-009` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Relationship: subject evaluation-lit-010 Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ Appendix D (APP4): Table 2 displays the best overall model per family; Tables 5/6 list each variant Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `links:subject:evaluation-lit-010` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Relationship: subject lit-009 Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ Appendix D (APP4): Table 2 displays the best overall model per family; Tables 5/6 list each variant Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `links:subject:lit-009` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Relationship: subject lit-010 Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ Appendix D (APP4): Table 2 displays the best overall model per family; Tables 5/6 list each variant Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `links:subject:lit-010` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Relationship: subject mrnabench-evaluation-3utrbert-eclip Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ Appendix D (APP4): Table 2 displays the best overall model per family; Tables 5/6 list each variant Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `links:subject:mrnabench-evaluation-3utrbert-eclip` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Relationship: subject mrnabench-evaluation-3utrbert-go Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ Appendix D (APP4): Table 2 displays the best overall model per family; Tables 5/6 list each variant Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `links:subject:mrnabench-evaluation-3utrbert-go` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Relationship: subject mrnabench-evaluation-3utrbert-hl Context-only references	mRNABench: A curated benchmark for mature mRNA property and function prediction Original source ↗ Appendix D (APP4): Table 2 displays the best overall model per family; Tables 5/6 list each variant Version: preprint archived 2025-07-08 Retrieved: 2026-09-16T10:41:16.497221+00:00	not individually reviewed No individual claim review recorded Audit details Field: `links:subject:mrnabench-evaluation-3utrbert-hl` Source artifact SHA-256: `79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

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mRNABench: A curated benchmark for mature mRNA property and function prediction · Original source · preprint archived 2025-07-08

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Stable ID: coverage-mrnabench-shared-experiment-set

areas: rna-transcriptomics
field: evidence_experiment_set_id
source locator: Appendix D (APP4): Table 2 displays the best overall model per family; Tables 5/6 list each variant
review: method: automated_source_review; date: 2026-09-23; note: Experiment-set overlap only; no exact configuration equivalence inferred from matching scores.

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subject: Orthrus · mRNABench HL · R
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subject: Orthrus · mRNABench MRL-HL-PAIR · R
subject: Orthrus on mRNABench PROT-LOC: Protein localisation
subject: Orthrus · mRNABench PROT-LOC · AUPRC (%)
subject: Orthrus on mRNABench GO: Gene Ontology term prediction
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subject: RNA-FM · mRNABench VEP · AUPRC (%)
subject: RNA-FM on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
subject: RNA-FM · mRNABench MRL-MPRA · R
subject: RNA-FM on mRNABench ECLIP: eCLIP binding site prediction
subject: RNA-FM · mRNABench ECLIP · AUPRC (%)
subject: RNA-FM on mRNABench MRNA-LOC-LR: mRNA localisation, long range
subject: RNA-FM · mRNABench MRNA-LOC-LR · AUPRC (%)
subject: RNA-FM on mRNABench MRNA-LOC-SR: mRNA localisation, short range
subject: RNA-FM · mRNABench MRNA-LOC-SR · AUPRC (%)
subject: RNA-FM on mRNABench HL: mRNA half life
subject: RNA-FM · mRNABench HL · R
subject: RNA-FM on mRNABench MRL: Mean ribosome load
subject: RNA-FM · mRNABench MRL · R
subject: RNA-FM on mRNABench MRL-HL-PAIR: Paired mean ribosome load and half life
subject: RNA-FM · mRNABench MRL-HL-PAIR · R
subject: RNA-FM on mRNABench PROT-LOC: Protein localisation
subject: RNA-FM · mRNABench PROT-LOC · AUPRC (%)
subject: RNA-FM on mRNABench GO: Gene Ontology term prediction
subject: RNA-FM · mRNABench GO · AUPRC (%)
subject: RNA-MSM on mRNABench VEP: Variant effect prediction
subject: RNA-MSM · mRNABench VEP · AUPRC (%)
subject: RNA-MSM on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
subject: RNA-MSM · mRNABench MRL-MPRA · R
subject: RNA-MSM on mRNABench ECLIP: eCLIP binding site prediction
subject: RNA-MSM · mRNABench ECLIP · AUPRC (%)
subject: RNA-MSM on mRNABench MRNA-LOC-LR: mRNA localisation, long range
subject: RNA-MSM · mRNABench MRNA-LOC-LR · AUPRC (%)
subject: RNA-MSM on mRNABench MRNA-LOC-SR: mRNA localisation, short range
subject: RNA-MSM · mRNABench MRNA-LOC-SR · AUPRC (%)
subject: RNA-MSM on mRNABench HL: mRNA half life
subject: RNA-MSM · mRNABench HL · R
subject: RNA-MSM on mRNABench MRL: Mean ribosome load
subject: RNA-MSM · mRNABench MRL · R
subject: RNA-MSM on mRNABench MRL-HL-PAIR: Paired mean ribosome load and half life
subject: RNA-MSM · mRNABench MRL-HL-PAIR · R
subject: RNA-MSM on mRNABench PROT-LOC: Protein localisation
subject: RNA-MSM · mRNABench PROT-LOC · AUPRC (%)
subject: RNA-MSM on mRNABench GO: Gene Ontology term prediction
subject: RNA-MSM · mRNABench GO · AUPRC (%)
subject: RNABERT on mRNABench VEP: Variant effect prediction
subject: RNABERT · mRNABench VEP · AUPRC (%)
subject: RNABERT on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
subject: RNABERT · mRNABench MRL-MPRA · R
subject: RNABERT on mRNABench ECLIP: eCLIP binding site prediction
subject: RNABERT · mRNABench ECLIP · AUPRC (%)
subject: RNABERT on mRNABench MRNA-LOC-LR: mRNA localisation, long range
subject: RNABERT · mRNABench MRNA-LOC-LR · AUPRC (%)
subject: RNABERT on mRNABench MRNA-LOC-SR: mRNA localisation, short range
subject: RNABERT · mRNABench MRNA-LOC-SR · AUPRC (%)
subject: RNABERT on mRNABench HL: mRNA half life
subject: RNABERT · mRNABench HL · R
subject: RNABERT on mRNABench MRL: Mean ribosome load
subject: RNABERT · mRNABench MRL · R
subject: RNABERT on mRNABench MRL-HL-PAIR: Paired mean ribosome load and half life
subject: RNABERT · mRNABench MRL-HL-PAIR · R
subject: RNABERT on mRNABench PROT-LOC: Protein localisation
subject: RNABERT · mRNABench PROT-LOC · AUPRC (%)
subject: RNABERT on mRNABench GO: Gene Ontology term prediction
subject: RNABERT · mRNABench GO · AUPRC (%)
subject: RNAErnie on mRNABench VEP: Variant effect prediction
subject: RNAErnie · mRNABench VEP · AUPRC (%)
subject: RNAErnie on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
subject: RNAErnie · mRNABench MRL-MPRA · R
subject: RNAErnie on mRNABench ECLIP: eCLIP binding site prediction
subject: RNAErnie · mRNABench ECLIP · AUPRC (%)
subject: RNAErnie on mRNABench MRNA-LOC-LR: mRNA localisation, long range
subject: RNAErnie · mRNABench MRNA-LOC-LR · AUPRC (%)
subject: RNAErnie on mRNABench MRNA-LOC-SR: mRNA localisation, short range
subject: RNAErnie · mRNABench MRNA-LOC-SR · AUPRC (%)
subject: RNAErnie on mRNABench HL: mRNA half life
subject: RNAErnie · mRNABench HL · R
subject: RNAErnie on mRNABench MRL: Mean ribosome load
subject: RNAErnie · mRNABench MRL · R
subject: RNAErnie on mRNABench MRL-HL-PAIR: Paired mean ribosome load and half life
subject: RNAErnie · mRNABench MRL-HL-PAIR · R
subject: RNAErnie on mRNABench PROT-LOC: Protein localisation
subject: RNAErnie · mRNABench PROT-LOC · AUPRC (%)
subject: RNAErnie on mRNABench GO: Gene Ontology term prediction
subject: RNAErnie · mRNABench GO · AUPRC (%)
subject: RiNALMo on mRNABench VEP: Variant effect prediction
subject: RiNALMo · mRNABench VEP · AUPRC (%)
subject: RiNALMo on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
subject: RiNALMo · mRNABench MRL-MPRA · R
subject: RiNALMo on mRNABench ECLIP: eCLIP binding site prediction
subject: RiNALMo · mRNABench ECLIP · AUPRC (%)
subject: RiNALMo on mRNABench MRNA-LOC-LR: mRNA localisation, long range
subject: RiNALMo · mRNABench MRNA-LOC-LR · AUPRC (%)
subject: RiNALMo on mRNABench MRNA-LOC-SR: mRNA localisation, short range
subject: RiNALMo · mRNABench MRNA-LOC-SR · AUPRC (%)
subject: RiNALMo on mRNABench HL: mRNA half life
subject: RiNALMo · mRNABench HL · R
subject: RiNALMo on mRNABench MRL: Mean ribosome load
subject: RiNALMo · mRNABench MRL · R
subject: RiNALMo on mRNABench MRL-HL-PAIR: Paired mean ribosome load and half life
subject: RiNALMo · mRNABench MRL-HL-PAIR · R
subject: RiNALMo on mRNABench PROT-LOC: Protein localisation
subject: RiNALMo · mRNABench PROT-LOC · AUPRC (%)
subject: RiNALMo on mRNABench GO: Gene Ontology term prediction
subject: RiNALMo · mRNABench GO · AUPRC (%)
subject: SpliceBERT on mRNABench VEP: Variant effect prediction
subject: SpliceBERT · mRNABench VEP · AUPRC (%)
subject: SpliceBERT on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
subject: SpliceBERT · mRNABench MRL-MPRA · R
subject: SpliceBERT on mRNABench ECLIP: eCLIP binding site prediction
subject: SpliceBERT · mRNABench ECLIP · AUPRC (%)
subject: SpliceBERT on mRNABench MRNA-LOC-LR: mRNA localisation, long range
subject: SpliceBERT · mRNABench MRNA-LOC-LR · AUPRC (%)
subject: SpliceBERT on mRNABench MRNA-LOC-SR: mRNA localisation, short range
subject: SpliceBERT · mRNABench MRNA-LOC-SR · AUPRC (%)
subject: SpliceBERT on mRNABench HL: mRNA half life
subject: SpliceBERT · mRNABench HL · R
subject: SpliceBERT on mRNABench MRL: Mean ribosome load
subject: SpliceBERT · mRNABench MRL · R
subject: SpliceBERT on mRNABench MRL-HL-PAIR: Paired mean ribosome load and half life
subject: SpliceBERT · mRNABench MRL-HL-PAIR · R
subject: SpliceBERT on mRNABench PROT-LOC: Protein localisation
subject: SpliceBERT · mRNABench PROT-LOC · AUPRC (%)
subject: SpliceBERT on mRNABench GO: Gene Ontology term prediction
subject: SpliceBERT · mRNABench GO · AUPRC (%)
subject: UTR-LM on mRNABench VEP: Variant effect prediction
subject: UTR-LM · mRNABench VEP · AUPRC (%)
subject: UTR-LM on mRNABench MRL-MPRA: Mean ribosome load on an MPRA library
subject: UTR-LM · mRNABench MRL-MPRA · R
subject: UTR-LM on mRNABench ECLIP: eCLIP binding site prediction
subject: UTR-LM · mRNABench ECLIP · AUPRC (%)
subject: UTR-LM on mRNABench MRNA-LOC-LR: mRNA localisation, long range
subject: UTR-LM · mRNABench MRNA-LOC-LR · AUPRC (%)
subject: UTR-LM on mRNABench MRNA-LOC-SR: mRNA localisation, short range
subject: UTR-LM · mRNABench MRNA-LOC-SR · AUPRC (%)
subject: UTR-LM on mRNABench HL: mRNA half life
subject: UTR-LM · mRNABench HL · R
subject: UTR-LM on mRNABench MRL: Mean ribosome load
subject: UTR-LM · mRNABench MRL · R
subject: UTR-LM on mRNABench MRL-HL-PAIR: Paired mean ribosome load and half life
subject: UTR-LM · mRNABench MRL-HL-PAIR · R
subject: UTR-LM on mRNABench PROT-LOC: Protein localisation
subject: UTR-LM · mRNABench PROT-LOC · AUPRC (%)
subject: UTR-LM on mRNABench GO: Gene Ontology term prediction
subject: UTR-LM · mRNABench GO · AUPRC (%)

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