Published pipeline execution benchmark; transcribed, not reproduced.
1 evaluation · 7 results. Different protocols are not a single leaderboard.
Protocol: FASTQ-to-VCF runtime, core-hours and Azure cost of three Sentieon DNAscope pipelines on one 120-vCPU instance (Hu et al. 2026 Table 2) · Dataset: 30x PacBio HiFi WGS input for DNAscope LongRead (Hu et al. 2026 Table 2)
Sorted by Compute cost (Azure on-demand price, FASTQ to VCF; 30x PacBio HiFi) (lower is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Compute cost (Azure on-demand price, FASTQ to VCF; 30x PacBio HiFi) | Compute cost (Azure spot price, FASTQ to VCF; 30x PacBio HiFi) | CPU time (total, FASTQ to VCF; 30x PacBio HiFi) | Runtime (alignment stage; 30x PacBio HiFi) | Runtime (preprocessing stage; 30x PacBio HiFi) | Runtime (total, FASTQ to VCF; 30x PacBio HiFi) | Runtime (variant calling stage; 30x PacBio HiFi) |
|---|---|---|---|---|---|---|---|
| Sentieon DNAscope LongRead on Azure HB120rs v3 (Hu et al. 2026)Evaluation | 2.5 | 0.25 | 82.5 | 11.5 | 0 | 41.2 | 29.8 |
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Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
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18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Not reported Context-only references | A novel and accelerated method for integrated alignment and variant calling from short and long reads Table 2 column 'DNAscope LongRead' Version: Frontiers in Bioinformatics 5:1691056, published 2026-01-05; PMC12813096 full-text XML | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation One value per pipeline; number of runs not stated Context-only references | A novel and accelerated method for integrated alignment and variant calling from short and long reads Table 2 column 'DNAscope LongRead' Version: Frontiers in Bioinformatics 5:1691056, published 2026-01-05; PMC12813096 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget One Azure Standard HB120rs v3 instance (120 vCPUs) Context-only references | A novel and accelerated method for integrated alignment and variant calling from short and long reads Table 2 column 'DNAscope LongRead' Version: Frontiers in Bioinformatics 5:1691056, published 2026-01-05; PMC12813096 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version Not reported Context-only references | A novel and accelerated method for integrated alignment and variant calling from short and long reads Table 2 column 'DNAscope LongRead' Version: Frontiers in Bioinformatics 5:1691056, published 2026-01-05; PMC12813096 full-text XML | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs FASTQ Context-only references | A novel and accelerated method for integrated alignment and variant calling from short and long reads Table 2 column 'DNAscope LongRead' Version: Frontiers in Bioinformatics 5:1691056, published 2026-01-05; PMC12813096 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: metric implementation Not reported Context-only references | A novel and accelerated method for integrated alignment and variant calling from short and long reads Table 2 column 'DNAscope LongRead' Version: Frontiers in Bioinformatics 5:1691056, published 2026-01-05; PMC12813096 full-text XML | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: population 30x PacBio HiFi WGS (sample not named) Context-only references | A novel and accelerated method for integrated alignment and variant calling from short and long reads Table 2 column 'DNAscope LongRead' Version: Frontiers in Bioinformatics 5:1691056, published 2026-01-05; PMC12813096 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: protocol id model-execution-20261011-protocol-hu2026-dnascope-azure-compute Context-only references | A novel and accelerated method for integrated alignment and variant calling from short and long reads Table 2 column 'DNAscope LongRead' Version: Frontiers in Bioinformatics 5:1691056, published 2026-01-05; PMC12813096 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: split One value; number of runs not stated Context-only references | A novel and accelerated method for integrated alignment and variant calling from short and long reads Table 2 column 'DNAscope LongRead' Version: Frontiers in Bioinformatics 5:1691056, published 2026-01-05; PMC12813096 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Origin author_reported Context-only references | A novel and accelerated method for integrated alignment and variant calling from short and long reads Table 2 column 'DNAscope LongRead' Version: Frontiers in Bioinformatics 5:1691056, published 2026-01-05; PMC12813096 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: model-execution-20261011-eval-hu2026-dnascope-longread-pb-azure