Published pipeline execution benchmark; transcribed, not reproduced.
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Release 2026-10-09-8cc1db47c7f9 · Evidence verified: Not verified
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1 evaluation · 5 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Parabricks 3.7.0-1, 4 GPUs on AWS (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 12.5 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 4 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 36 (AWS, GPU4, Muse), column 'Cost ($)' |
| Configuration: Parabricks 3.7.0-1, 4 GPUs on AWS (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | − 29.88% cost-saving percent · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 4 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 36 (AWS, GPU4, Muse), column '% cost-savings' |
| Configuration: Parabricks 3.7.0-1, 4 GPUs on AWS (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 61.4 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 4 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 36 (AWS, GPU4, Muse), column 'Time (min)' |
| Configuration: Parabricks 3.7.0-1, 4 GPUs on AWS (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 1.02 runtime hour · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 4 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 36 (AWS, GPU4, Muse), column 'Time (h)' |
| Configuration: Parabricks 3.7.0-1, 4 GPUs on AWS (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 6.93 speedup unitless · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 4 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 36 (AWS, GPU4, Muse), column 'Fold acceleration' |
Source checking is not independent reproduction. Release 2026-10-09-8cc1db47c7f9.
model-execution-20261009-protocol-oconnell2023-muse
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
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18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Not reported Context-only references | Accelerating genomic workflows using NVIDIA Parabricks Table 1, row 36 (AWS, GPU4, Muse) Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation Single run Context-only references | Accelerating genomic workflows using NVIDIA Parabricks Table 1, row 36 (AWS, GPU4, Muse) Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget One recorded run per machine; no fixed hardware budget, machine type is part of each configuration (Table 1 VM-type) Context-only references | Accelerating genomic workflows using NVIDIA Parabricks Table 1, row 36 (AWS, GPU4, Muse) Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version Not reported Context-only references | Accelerating genomic workflows using NVIDIA Parabricks Table 1, row 36 (AWS, GPU4, Muse) Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs BAM Context-only references | Accelerating genomic workflows using NVIDIA Parabricks Table 1, row 36 (AWS, GPU4, Muse) Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation Workflow wall-clock; cost from on-demand hourly price Context-only references | Accelerating genomic workflows using NVIDIA Parabricks Table 1, row 36 (AWS, GPU4, Muse) Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.population HG002 30x synthetic tumour Context-only references | Accelerating genomic workflows using NVIDIA Parabricks Table 1, row 36 (AWS, GPU4, Muse) Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id model-execution-20261009-protocol-oconnell2023-muse Context-only references | Accelerating genomic workflows using NVIDIA Parabricks Table 1, row 36 (AWS, GPU4, Muse) Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.split Single sample Context-only references | Accelerating genomic workflows using NVIDIA Parabricks Table 1, row 36 (AWS, GPU4, Muse) Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.origin independent_paper Context-only references | Accelerating genomic workflows using NVIDIA Parabricks Table 1, row 36 (AWS, GPU4, Muse) Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
Stable ID: model-execution-20261009-eval-oconnell2023-aws-gpu4-muse