rewirebio.iobenchmarks
Dataset

Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0

Somatic input in O'Connell et al. 2023.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-10-09-ba02f2f4a36e · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • recipe pinned: verification is missing
  • resource estimate: verification is missing

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

44 evaluations · 168 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
4.1 compute-cost
us-dollar · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

LoFreq on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-lofreq

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 23 (AWS, C6i.8xlarge, LoFreq), column 'Cost ($)'
Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
180 runtime
minute · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

LoFreq on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-lofreq

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 23 (AWS, C6i.8xlarge, LoFreq), column 'Time (min)'
Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
3 runtime
hour · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

LoFreq on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-lofreq

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 23 (AWS, C6i.8xlarge, LoFreq), column 'Time (h)'
Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
9.6 compute-cost
us-dollar · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Muse on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-muse

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 34 (AWS, C6i.8xlarge, Muse), column 'Cost ($)'
Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
425 runtime
minute · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Muse on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-muse

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 34 (AWS, C6i.8xlarge, Muse), column 'Time (min)'
Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
7.09 runtime
hour · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Muse on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-muse

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 34 (AWS, C6i.8xlarge, Muse), column 'Time (h)'
Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
9.4 compute-cost
us-dollar · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Mutect2 on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-mutect2

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 45 (AWS, C6i.8xlarge, Mutect2), column 'Cost ($)'
Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
415 runtime
minute · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Mutect2 on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-mutect2

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 45 (AWS, C6i.8xlarge, Mutect2), column 'Time (min)'
Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
6.91 runtime
hour · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Mutect2 on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-mutect2

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 45 (AWS, C6i.8xlarge, Mutect2), column 'Time (h)'
Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)Protocol: SomaticSniper execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
8.88 compute-cost
us-dollar · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

SomaticSniper on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-somaticsniper

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 56 (AWS, C6i.8xlarge, SomaticSniper), column 'Cost ($)'
Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)Protocol: SomaticSniper execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
392 runtime
minute · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

SomaticSniper on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-somaticsniper

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 56 (AWS, C6i.8xlarge, SomaticSniper), column 'Time (min)'
Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)Protocol: SomaticSniper execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
6.53 runtime
hour · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

SomaticSniper on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-somaticsniper

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 56 (AWS, C6i.8xlarge, SomaticSniper), column 'Time (h)'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
29.6 compute-cost
us-dollar · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

LoFreq on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-lofreq

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 24 (AWS, GPU2, LoFreq), column 'Cost ($)'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
− 625.07% cost-saving
percent · higher

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

LoFreq on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-lofreq

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 24 (AWS, GPU2, LoFreq), column '% cost-savings'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
145 runtime
minute · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

LoFreq on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-lofreq

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 24 (AWS, GPU2, LoFreq), column 'Time (min)'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
2.42 runtime
hour · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

LoFreq on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-lofreq

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 24 (AWS, GPU2, LoFreq), column 'Time (h)'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
1.24 speedup
unitless · higher

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

LoFreq on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-lofreq

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 24 (AWS, GPU2, LoFreq), column 'Fold acceleration'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
13.3 compute-cost
us-dollar · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Muse on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-muse

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 35 (AWS, GPU2, Muse), column 'Cost ($)'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
− 37.97% cost-saving
percent · higher

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Muse on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-muse

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 35 (AWS, GPU2, Muse), column '% cost-savings'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
65.2 runtime
minute · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Muse on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-muse

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 35 (AWS, GPU2, Muse), column 'Time (min)'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
1.09 runtime
hour · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Muse on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-muse

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 35 (AWS, GPU2, Muse), column 'Time (h)'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
6.52 speedup
unitless · higher

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Muse on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-muse

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 35 (AWS, GPU2, Muse), column 'Fold acceleration'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
5.79 compute-cost
us-dollar · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Mutect2 on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-mutect2

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 46 (AWS, GPU2, Mutect2), column 'Cost ($)'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
38.3% cost-saving
percent · higher

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Mutect2 on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-mutect2

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 46 (AWS, GPU2, Mutect2), column '% cost-savings'
Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1)
Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
28.4 runtime
minute · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Mutect2 on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023)

model-execution-20261009-protocol-oconnell2023-mutect2

Aggregation: Not reported

Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 46 (AWS, GPU2, Mutect2), column 'Time (min)'

Source checking is not independent reproduction. Release 2026-10-09-ba02f2f4a36e.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

5 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-09-ba02f2f4a36e
Property and statementOriginal source and locationReview and provenance
attributes.population
HG002 30x BAM after MarkDuplicates and BQSR, with 198 SNVs at random VAF 0.001-0.4 from ICGC donor DO32536 sites
Context-only references
Accelerating genomic workflows using NVIDIA Parabricks

Original source ↗

Methods 'Sampling and algorithms' paragraph 3

Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML
Retrieved: 2026-10-09T20:20:46Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.population

Source artifact SHA-256: 1d9c27beb3780a153bc6d80817bf098539e5c605107da0e88f34d6e0d56f3e4f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.source_locator
Methods 'Sampling and algorithms' paragraph 3
Context-only references
Accelerating genomic workflows using NVIDIA Parabricks

Original source ↗

Methods 'Sampling and algorithms' paragraph 3

Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML
Retrieved: 2026-10-09T20:20:46Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 1d9c27beb3780a153bc6d80817bf098539e5c605107da0e88f34d6e0d56f3e4f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.split
Single synthetic tumour, one recorded run per configuration
Context-only references
Accelerating genomic workflows using NVIDIA Parabricks

Original source ↗

Methods 'Sampling and algorithms' paragraph 3

Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML
Retrieved: 2026-10-09T20:20:46Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.split

Source artifact SHA-256: 1d9c27beb3780a153bc6d80817bf098539e5c605107da0e88f34d6e0d56f3e4f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

description
Somatic input in O'Connell et al. 2023.
Context-only references
Accelerating genomic workflows using NVIDIA Parabricks

Original source ↗

Methods 'Sampling and algorithms' paragraph 3

Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML
Retrieved: 2026-10-09T20:20:46Z

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 1d9c27beb3780a153bc6d80817bf098539e5c605107da0e88f34d6e0d56f3e4f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

name
Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0
Context-only references
Accelerating genomic workflows using NVIDIA Parabricks

Original source ↗

Methods 'Sampling and algorithms' paragraph 3

Version: BMC Bioinformatics 24:221, published 2023-05-31; PMC10230726 full-text XML
Retrieved: 2026-10-09T20:20:46Z

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 1d9c27beb3780a153bc6d80817bf098539e5c605107da0e88f34d6e0d56f3e4f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

Release 2026-10-09-ba02f2f4a36e · Record review: source checked

1 source records and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: model-execution-20261009-data-oconnell2023-hg002-somatosim

areas
dna-genomes
contexts
clinical_research
population
HG002 30x BAM after MarkDuplicates and BQSR, with 198 SNVs at random VAF 0.001-0.4 from ICGC donor DO32536 sites
split
Single synthetic tumour, one recorded run per configuration
source locator
Methods 'Sampling and algorithms' paragraph 3
missing metadata
population detail: reason: unreported; note: The matched normal used by the somatic callers is not described; version: reason: unreported
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