| Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 4.1 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 23 (AWS, C6i.8xlarge, LoFreq), column 'Cost ($)' |
|---|
| Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 180 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 23 (AWS, C6i.8xlarge, LoFreq), column 'Time (min)' |
|---|
| Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 3 runtime hour · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 23 (AWS, C6i.8xlarge, LoFreq), column 'Time (h)' |
|---|
| Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 9.6 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 34 (AWS, C6i.8xlarge, Muse), column 'Cost ($)' |
|---|
| Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 425 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 34 (AWS, C6i.8xlarge, Muse), column 'Time (min)' |
|---|
| Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 7.09 runtime hour · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 34 (AWS, C6i.8xlarge, Muse), column 'Time (h)' |
|---|
| Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) | Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 9.4 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMutect2 on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-mutect2 Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 45 (AWS, C6i.8xlarge, Mutect2), column 'Cost ($)' |
|---|
| Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) | Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 415 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMutect2 on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-mutect2 Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 45 (AWS, C6i.8xlarge, Mutect2), column 'Time (min)' |
|---|
| Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) | Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 6.91 runtime hour · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMutect2 on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-mutect2 Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 45 (AWS, C6i.8xlarge, Mutect2), column 'Time (h)' |
|---|
| Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) | Protocol: SomaticSniper execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 8.88 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSomaticSniper on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-somaticsniper Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 56 (AWS, C6i.8xlarge, SomaticSniper), column 'Cost ($)' |
|---|
| Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) | Protocol: SomaticSniper execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 392 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSomaticSniper on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-somaticsniper Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 56 (AWS, C6i.8xlarge, SomaticSniper), column 'Time (min)' |
|---|
| Configuration: CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) | Protocol: SomaticSniper execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 6.53 runtime hour · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceSomaticSniper on CPU tools on AWS c6i.8xlarge (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-somaticsniper Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 56 (AWS, C6i.8xlarge, SomaticSniper), column 'Time (h)' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 29.6 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 24 (AWS, GPU2, LoFreq), column 'Cost ($)' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | − 625.07% cost-saving percent · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 24 (AWS, GPU2, LoFreq), column '% cost-savings' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 145 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 24 (AWS, GPU2, LoFreq), column 'Time (min)' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 2.42 runtime hour · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 24 (AWS, GPU2, LoFreq), column 'Time (h)' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: LoFreq execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 1.24 speedup unitless · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLoFreq on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-lofreq Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 24 (AWS, GPU2, LoFreq), column 'Fold acceleration' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 13.3 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 35 (AWS, GPU2, Muse), column 'Cost ($)' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | − 37.97% cost-saving percent · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 35 (AWS, GPU2, Muse), column '% cost-savings' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 65.2 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 35 (AWS, GPU2, Muse), column 'Time (min)' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 1.09 runtime hour · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 35 (AWS, GPU2, Muse), column 'Time (h)' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: Muse execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 6.52 speedup unitless · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMuse on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-muse Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 35 (AWS, GPU2, Muse), column 'Fold acceleration' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 5.79 compute-cost us-dollar · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMutect2 on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-mutect2 Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 46 (AWS, GPU2, Mutect2), column 'Cost ($)' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 38.3% cost-saving percent · higher Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMutect2 on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-mutect2 Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 46 (AWS, GPU2, Mutect2), column '% cost-savings' |
|---|
| Configuration: Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) | Protocol: Mutect2 execution on CPU and GPU cloud and DGX machines (O'Connell et al. 2023 Table 1) Dataset: Synthetic tumour BAM: HG002 30x with 198 SNVs added by SomatoSim v1.0.0 | 28.4 runtime minute · lower Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMutect2 on Parabricks 3.7.0-1, 2 GPUs on AWS (O'Connell et al. 2023) model-execution-20261009-protocol-oconnell2023-mutect2 Aggregation: Not reported Accelerating genomic workflows using NVIDIA Parabricks · Table 1, row 46 (AWS, GPU2, Mutect2), column 'Time (min)' |
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