MIMIC mRNABench probes evaluation of Orthrus on Protein Localization prediction, scored with AUPR.
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Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified
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1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Pipeline: Orthrus | Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split) | 0.396 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceOrthrus on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.
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14 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.adaptation MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation AUPR Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id mimic-2026-mrnabench-task-protein-localization Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.evidence_overlap MIMIC results are reported here; every comparator is explicitly quoted from prior mRNABench work (Appendix D.3), not rerun. Do not count quoted rows as independent experiments. Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.origin paper_compilation Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.protocol MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.published_score_reproduction false Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization) Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.suite_complete false Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description MIMIC mRNABench probes evaluation of Orthrus on Protein Localization prediction, scored with AUPR. Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: mimic-2026-mrnabench-evaluation-orthrus-protein-localization