rewirebio.iobenchmarks
Evaluation

Evo2 on MIMIC mRNABench probes eCLIP: eCLIP prediction

MIMIC mRNABench probes evaluation of Evo2 on eCLIP prediction, scored with AUPR.

Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Pipeline: Evo2Protocol: MIMIC mRNABench probes eCLIP: eCLIP prediction
Dataset subset: mRNABench eCLIP as reported in MIMIC Table S11 (MIMIC mRNABench probes split)
0.473 AUPRC
fraction · higher

Uncertainty: Not yet extracted

Coverage: Not reported scored / Not reported eligible

Result quoted from another source · Source checked
Methods, coverage and source

Evo2 on MIMIC mRNABench probes eCLIP: eCLIP prediction

MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.

Aggregation: Not reported

MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-11-02-a7f03c9e55a5 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified
  • Sample annotations are recorded: not yet verified
  • Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • A pinned run recipe exists: not yet verified
  • Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Independent validation data exist: not yet verified
  • Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Evaluation procedure

MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.

Pipeline
Evo2
Protocol
MIMIC mRNABench probes eCLIP: eCLIP prediction
Dataset subset
mRNABench eCLIP as reported in MIMIC Table S11 (MIMIC mRNABench probes split)
origin
Result quoted from another source
configuration
Not reported
protocol id
mimic-2026-mrnabench-task-eclip
metric implementation
AUPR

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split
Not reported
Adaptation
Not reported
Scoring implementation
AUPR

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

12 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statementOriginal source and locationReview and provenance
Adaptation
MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.
Context-only references
MIMIC v1: Table S11 and Appendix D.3

Original source ↗

Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)

Version: arXiv version 1
Retrieved: 2026-09-23

not individually reviewed

No individual claim review recorded

paper compilation

Audit details

Field: attributes.adaptation

Source artifact SHA-256: 6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: metric implementation
AUPR
Context-only references
MIMIC v1: Table S11 and Appendix D.3

Original source ↗

Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)

Version: arXiv version 1
Retrieved: 2026-09-23

not individually reviewed

No individual claim review recorded

paper compilation

Audit details

Field: attributes.comparison.metric_implementation

Source artifact SHA-256: 6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: protocol id
mimic-2026-mrnabench-task-eclip
Context-only references
MIMIC v1: Table S11 and Appendix D.3

Original source ↗

Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)

Version: arXiv version 1
Retrieved: 2026-09-23

not individually reviewed

No individual claim review recorded

paper compilation

Audit details

Field: attributes.comparison.protocol_id

Source artifact SHA-256: 6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Evidence overlap
MIMIC results are reported here; every comparator is explicitly quoted from prior mRNABench work (Appendix D.3), not rerun. Do not count quoted rows as independent experiments.
Context-only references
MIMIC v1: Table S11 and Appendix D.3

Original source ↗

Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)

Version: arXiv version 1
Retrieved: 2026-09-23

not individually reviewed

No individual claim review recorded

paper compilation

Audit details

Field: attributes.evidence_overlap

Source artifact SHA-256: 6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Origin
paper_compilation
Context-only references
MIMIC v1: Table S11 and Appendix D.3

Original source ↗

Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)

Version: arXiv version 1
Retrieved: 2026-09-23

not individually reviewed

No individual claim review recorded

paper compilation

Audit details

Field: attributes.origin

Source artifact SHA-256: 6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Protocol
MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.
Context-only references
MIMIC v1: Table S11 and Appendix D.3

Original source ↗

Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)

Version: arXiv version 1
Retrieved: 2026-09-23

not individually reviewed

No individual claim review recorded

paper compilation

Audit details

Field: attributes.protocol

Source artifact SHA-256: 6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Source location
Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)
Context-only references
MIMIC v1: Table S11 and Appendix D.3

Original source ↗

Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)

Version: arXiv version 1
Retrieved: 2026-09-23

not individually reviewed

No individual claim review recorded

paper compilation

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Description
MIMIC mRNABench probes evaluation of Evo2 on eCLIP prediction, scored with AUPR.
Context-only references
MIMIC v1: Table S11 and Appendix D.3

Original source ↗

Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)

Version: arXiv version 1
Retrieved: 2026-09-23

not individually reviewed

No individual claim review recorded

paper compilation

Audit details

Field: description

Source artifact SHA-256: 6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Relationship: assessment
mimic-2026-mrnabench-task-eclip
Context-only references
MIMIC v1: Table S11 and Appendix D.3

Original source ↗

Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)

Version: arXiv version 1
Retrieved: 2026-09-23

not individually reviewed

No individual claim review recorded

paper compilation

Audit details

Field: links:assessment:mimic-2026-mrnabench-task-eclip

Source artifact SHA-256: 6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Relationship: data
mimic-2026-mrnabench-dataset-mrnabench-eclip-as-reported-in-mimic-table-s11
Context-only references
MIMIC v1: Table S11 and Appendix D.3

Original source ↗

Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)

Version: arXiv version 1
Retrieved: 2026-09-23

not individually reviewed

No individual claim review recorded

paper compilation

Audit details

Field: links:data:mimic-2026-mrnabench-dataset-mrnabench-eclip-as-reported-in-mimic-table-s11

Source artifact SHA-256: 6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: mimic-2026-mrnabench-evaluation-evo2-eclip

areas
rna-transcriptomes
tasks
eCLIP prediction
origin
paper_compilation
protocol
MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.
comparison
protocol id: mimic-2026-mrnabench-task-eclip; metric implementation: AUPR
missing metadata
budget: reason: unreported; checkpoint revision: reason: unreported; seeds: reason: unreported; split manifest: reason: unextracted
source locator
Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 2 (eCLIP)
adaptation
MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.
evidence overlap
MIMIC results are reported here; every comparator is explicitly quoted from prior mRNABench work (Appendix D.3), not rerun. Do not count quoted rows as independent experiments.
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