MIMIC mRNABench probes evaluation of DNABERT-S on GO prediction, scored with AUPR.
1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Pipeline: DNABERT-S | Protocol: MIMIC mRNABench probes GO: GO prediction Dataset subset: mRNABench GO as reported in MIMIC Table S11 (MIMIC mRNABench probes split) | 0.318 AUPRC fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDNABERT-S on MIMIC mRNABench probes GO: GO prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 3 (GO) |
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MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.
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12 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Adaptation MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 3 (GO) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: metric implementation AUPR Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 3 (GO) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: protocol id mimic-2026-mrnabench-task-go Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 3 (GO) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Evidence overlap MIMIC results are reported here; every comparator is explicitly quoted from prior mRNABench work (Appendix D.3), not rerun. Do not count quoted rows as independent experiments. Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 3 (GO) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Origin paper_compilation Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 3 (GO) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Protocol MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 3 (GO) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 3 (GO) Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 3 (GO) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description MIMIC mRNABench probes evaluation of DNABERT-S on GO prediction, scored with AUPR. Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 3 (GO) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: assessment mimic-2026-mrnabench-task-go Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 3 (GO) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: data mimic-2026-mrnabench-dataset-mrnabench-go-as-reported-in-mimic-table-s11 Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 3 (GO) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Stable ID: mimic-2026-mrnabench-evaluation-dnabert-s-go