Gene-MTEB genomic embedding benchmark evaluation of NT-2.5b-Multi on HMPR-s2s-align genomic embedding evaluation, scored with V-measure.
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1 evaluation · 1 result. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Pipeline: NT-2.5b-Multi | Protocol: Gene-MTEB genomic embedding benchmark HMPR-s2s-align: HMPR-s2s-align genomic embedding evaluation Dataset subset: HMPR-s2s-align Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split) | 0.144 v_measure dimensionless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceFrozen model last-hidden-state embeddings, mean pooled. Logistic regression for eight classification tasks and mini-batch k-means for eight clustering tasks. Source paper Section 5.3. Current official gene-mteb implementation corroborates task identities but its commit is not proven identical to the paper evaluator. Exact dataset release, split hash, scored counts and evaluator commit are unreported in the paper. Do not substitute current mutable HF main for the original split. Aggregation: Not reported METAGENE-1 v1: Gene-MTEB complete component tasks · Table 3 (S5.T3), row HMPR-s2s-align, column NT-2.5b-Multi; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1 |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Frozen model last-hidden-state embeddings, mean pooled. Logistic regression for eight classification tasks and mini-batch k-means for eight clustering tasks. Source paper Section 5.3. Current official gene-mteb implementation corroborates task identities but its commit is not proven identical to the paper evaluator. Exact dataset release, split hash, scored counts and evaluator commit are unreported in the paper. Do not substitute current mutable HF main for the original split.
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Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
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14 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.adaptation Frozen mean-pooled last-layer embeddings. Logistic regression is fitted on labelled training data for classification; mini-batch k-means is used for clustering. Context-only references | METAGENE-1 v1: Gene-MTEB complete component tasks Table 3 (S5.T3), row HMPR-s2s-align, column NT-2.5b-Multi; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1 Version: arXiv:2501.02045v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation V-measure Context-only references | METAGENE-1 v1: Gene-MTEB complete component tasks Table 3 (S5.T3), row HMPR-s2s-align, column NT-2.5b-Multi; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1 Version: arXiv:2501.02045v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id metagene-gene-mteb-task-hmpr-s2s-align Context-only references | METAGENE-1 v1: Gene-MTEB complete component tasks Table 3 (S5.T3), row HMPR-s2s-align, column NT-2.5b-Multi; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1 Version: arXiv:2501.02045v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.evidence_overlap Sixteen component tasks from a single paper experiment set. The 25 aggregate table cells are preserved in the review receipt and not republished as independent results. Context-only references | METAGENE-1 v1: Gene-MTEB complete component tasks Table 3 (S5.T3), row HMPR-s2s-align, column NT-2.5b-Multi; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1 Version: arXiv:2501.02045v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.origin author_reported Context-only references | METAGENE-1 v1: Gene-MTEB complete component tasks Table 3 (S5.T3), row HMPR-s2s-align, column NT-2.5b-Multi; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1 Version: arXiv:2501.02045v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.protocol Frozen model last-hidden-state embeddings, mean pooled. Logistic regression for eight classification tasks and mini-batch k-means for eight clustering tasks. Source paper Section 5.3. Current official gene-mteb implementation corroborates task identities but its commit is not proven identical to the paper evaluator. Exact dataset release, split hash, scored counts and evaluator commit are unreported in the paper. Do not substitute current mutable HF main for the original split. Context-only references | METAGENE-1 v1: Gene-MTEB complete component tasks Table 3 (S5.T3), row HMPR-s2s-align, column NT-2.5b-Multi; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1 Version: arXiv:2501.02045v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.published_score_reproduction false Context-only references | METAGENE-1 v1: Gene-MTEB complete component tasks Table 3 (S5.T3), row HMPR-s2s-align, column NT-2.5b-Multi; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1 Version: arXiv:2501.02045v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Table 3 (S5.T3), row HMPR-s2s-align, column NT-2.5b-Multi; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1 Context-only references | METAGENE-1 v1: Gene-MTEB complete component tasks Table 3 (S5.T3), row HMPR-s2s-align, column NT-2.5b-Multi; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1 Version: arXiv:2501.02045v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.suite_complete false Context-only references | METAGENE-1 v1: Gene-MTEB complete component tasks Table 3 (S5.T3), row HMPR-s2s-align, column NT-2.5b-Multi; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1 Version: arXiv:2501.02045v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Gene-MTEB genomic embedding benchmark evaluation of NT-2.5b-Multi on HMPR-s2s-align genomic embedding evaluation, scored with V-measure. Context-only references | METAGENE-1 v1: Gene-MTEB complete component tasks Table 3 (S5.T3), row HMPR-s2s-align, column NT-2.5b-Multi; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1 Version: arXiv:2501.02045v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: metagene-gene-mteb-evaluation-nt-2-5b-multi-hmpr-s2s-align