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Results
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Claims
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- DNABERT-2: uses model discovery-model-dnabert-2: Uses model DNABERT-2 (Section 5.3; Table 3 DNABERT-2 column)
- Gene-MTEB genomic embedding benchmark HMPD-disease: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row HMPD-disease, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark HMPD-sex: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row HMPD-sex, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark HMPD-single: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row HMPD-single, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark HMPD-source: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row HMPD-source, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark HMPR-p2p: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row HMPR-p2p, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark HMPR-s2s-align: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row HMPR-s2s-align, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark HMPR-s2s-small: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row HMPR-s2s-small, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark HMPR-s2s-tiny: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row HMPR-s2s-tiny, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark Human-Virus-1: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row Human-Virus-1, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark Human-Virus-2: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row Human-Virus-2, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark Human-Virus-3: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row Human-Virus-3, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark Human-Virus-4: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row Human-Virus-4, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark HVR-p2p: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row HVR-p2p, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark HVR-s2s-align: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row HVR-s2s-align, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark HVR-s2s-small: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row HVR-s2s-small, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- Gene-MTEB genomic embedding benchmark HVR-s2s-tiny: part of discovery-benchmark-gene-mteb: Part of Gene-MTEB (Table 3 (S5.T3), row HVR-s2s-tiny, column DNABERT-2; Section 5.3 paragraphs S5.SS3.p2.1 and S5.SS3.p3.1)
- METAGENE-1: uses model catalog-model-metagene-1: Uses model METAGENE-1 (Section 5.3; Table 3 METAGENE-1 column)
- NT-2.5b-1000g: uses model discovery-model-nucleotide-transformer: Uses model Nucleotide Transformer (Section 5.3; Table 3 NT-2.5b-1000g column)
- NT-2.5b-Multi: uses model discovery-model-nucleotide-transformer: Uses model Nucleotide Transformer (Section 5.3; Table 3 NT-2.5b-Multi column)
Models, benchmarks and other records
Pipelines (5)
Benchmarks (1)
Protocols (16)
- Gene-MTEB genomic embedding benchmark HMPD-disease: HMPD-disease genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark HMPD-sex: HMPD-sex genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark HMPD-single: HMPD-single genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark HMPD-source: HMPD-source genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark HMPR-p2p: HMPR-p2p genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark HMPR-s2s-align: HMPR-s2s-align genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark HMPR-s2s-small: HMPR-s2s-small genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark HMPR-s2s-tiny: HMPR-s2s-tiny genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark Human-Virus-1: Human-Virus-1 genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark Human-Virus-2: Human-Virus-2 genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark Human-Virus-3: Human-Virus-3 genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark Human-Virus-4: Human-Virus-4 genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark HVR-p2p: HVR-p2p genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark HVR-s2s-align: HVR-s2s-align genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark HVR-s2s-small: HVR-s2s-small genomic embedding evaluation
- Gene-MTEB genomic embedding benchmark HVR-s2s-tiny: HVR-s2s-tiny genomic embedding evaluation
Dataset subsets (16)
- HMPD-disease Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- HMPD-sex Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- HMPD-single Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- HMPD-source Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- HMPR-p2p Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- HMPR-s2s-align Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- HMPR-s2s-small Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- HMPR-s2s-tiny Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- Human-Virus-1 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- Human-Virus-2 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- Human-Virus-3 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- Human-Virus-4 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- HVR-p2p Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- HVR-s2s-align Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- HVR-s2s-small Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
- HVR-s2s-tiny Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)
Evaluations (80)
- DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPD-disease: HMPD-disease genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPD-sex: HMPD-sex genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPD-single: HMPD-single genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPD-source: HMPD-source genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPR-p2p: HMPR-p2p genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPR-s2s-align: HMPR-s2s-align genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPR-s2s-small: HMPR-s2s-small genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPR-s2s-tiny: HMPR-s2s-tiny genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark Human-Virus-1: Human-Virus-1 genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark Human-Virus-2: Human-Virus-2 genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark Human-Virus-3: Human-Virus-3 genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark Human-Virus-4: Human-Virus-4 genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark HVR-p2p: HVR-p2p genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark HVR-s2s-align: HVR-s2s-align genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark HVR-s2s-small: HVR-s2s-small genomic embedding evaluation
- DNABERT-2 on Gene-MTEB genomic embedding benchmark HVR-s2s-tiny: HVR-s2s-tiny genomic embedding evaluation
- DNABERT-S on Gene-MTEB genomic embedding benchmark HMPD-disease: HMPD-disease genomic embedding evaluation
- DNABERT-S on Gene-MTEB genomic embedding benchmark HMPD-sex: HMPD-sex genomic embedding evaluation
- DNABERT-S on Gene-MTEB genomic embedding benchmark HMPD-single: HMPD-single genomic embedding evaluation
- DNABERT-S on Gene-MTEB genomic embedding benchmark HMPD-source: HMPD-source genomic embedding evaluation
- DNABERT-S on Gene-MTEB genomic embedding benchmark HMPR-p2p: HMPR-p2p genomic embedding evaluation
- DNABERT-S on Gene-MTEB genomic embedding benchmark HMPR-s2s-align: HMPR-s2s-align genomic embedding evaluation
- DNABERT-S on Gene-MTEB genomic embedding benchmark HMPR-s2s-small: HMPR-s2s-small genomic embedding evaluation
- DNABERT-S on Gene-MTEB genomic embedding benchmark HMPR-s2s-tiny: HMPR-s2s-tiny genomic embedding evaluation
- DNABERT-S on Gene-MTEB genomic embedding benchmark Human-Virus-1: Human-Virus-1 genomic embedding evaluation
Evidence
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Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
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13 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Artifact SHA-256 a426c77d137138cfc33410a1e54a1cce521007bdc9e3176f4774d0105424a7fe Source metadata | METAGENE-1 v1: Gene-MTEB complete component tasks No field-specific location recorded Version: arXiv:2501.02045v1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Artifact url https://arxiv.org/html/2501.02045v1 Source metadata | METAGENE-1 v1: Gene-MTEB complete component tasks No field-specific location recorded Version: arXiv:2501.02045v1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Retrieved at 2026-09-23T11:22:00.101850+00:00 Source metadata | METAGENE-1 v1: Gene-MTEB complete component tasks No field-specific location recorded Version: arXiv:2501.02045v1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Url https://arxiv.org/html/2501.02045v1 Source metadata | METAGENE-1 v1: Gene-MTEB complete component tasks No field-specific location recorded Version: arXiv:2501.02045v1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Venue arXiv Source metadata | METAGENE-1 v1: Gene-MTEB complete component tasks No field-specific location recorded Version: arXiv:2501.02045v1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Version arXiv:2501.02045v1 Source metadata | METAGENE-1 v1: Gene-MTEB complete component tasks No field-specific location recorded Version: arXiv:2501.02045v1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Pinned primary artifact. Review is limited to the cited rows. Source metadata | METAGENE-1 v1: Gene-MTEB complete component tasks No field-specific location recorded Version: arXiv:2501.02045v1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Facets: areas1 values
| METAGENE-1 v1: Gene-MTEB complete component tasks No field-specific location recorded Version: arXiv:2501.02045v1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Record ID coverage-source-metagene-paper-v1 Source metadata | METAGENE-1 v1: Gene-MTEB complete component tasks No field-specific location recorded Version: arXiv:2501.02045v1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Record type source Source metadata | METAGENE-1 v1: Gene-MTEB complete component tasks No field-specific location recorded Version: arXiv:2501.02045v1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Pinned primary artifact. Review is limited to the cited rows.
Technical metadata and extraction receipts
Stable ID: coverage-source-metagene-paper-v1
- areas
- dna-genomes
- url
- https://arxiv.org/html/2501.02045v1
- artifact url
- https://arxiv.org/html/2501.02045v1
- artifact sha256
- a426c77d137138cfc33410a1e54a1cce521007bdc9e3176f4774d0105424a7fe
- retrieved at
- 2026-09-23T11:22:00.101850+00:00
- venue
- arXiv
- version
- arXiv:2501.02045v1