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METAGENE-1 v1: Gene-MTEB complete component tasks

arXiv · arXiv:2501.02045v1

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Model or configurationMetricValueDatasetEvaluation
DNABERT-2Accuracy0.480 fractionHMPD-disease Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPD-disease: HMPD-disease genomic embedding evaluation
DNABERT-2Accuracy0.366 fractionHMPD-sex Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPD-sex: HMPD-sex genomic embedding evaluation
DNABERT-2Accuracy0.292 fractionHMPD-single Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPD-single: HMPD-single genomic embedding evaluation
DNABERT-2Accuracy0.451 fractionHMPD-source Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPD-source: HMPD-source genomic embedding evaluation
DNABERT-2V measure0.566 unitlessHMPR-p2p Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPR-p2p: HMPR-p2p genomic embedding evaluation
DNABERT-2V measure0.127 unitlessHMPR-s2s-align Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPR-s2s-align: HMPR-s2s-align genomic embedding evaluation
DNABERT-2V measure0.419 unitlessHMPR-s2s-small Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPR-s2s-small: HMPR-s2s-small genomic embedding evaluation
DNABERT-2V measure0.274 unitlessHMPR-s2s-tiny Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark HMPR-s2s-tiny: HMPR-s2s-tiny genomic embedding evaluation
DNABERT-2Accuracy0.594 fractionHuman-Virus-1 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark Human-Virus-1: Human-Virus-1 genomic embedding evaluation
DNABERT-2Accuracy0.507 fractionHuman-Virus-2 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark Human-Virus-2: Human-Virus-2 genomic embedding evaluation
DNABERT-2Accuracy0.606 fractionHuman-Virus-3 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark Human-Virus-3: Human-Virus-3 genomic embedding evaluation
DNABERT-2Accuracy0.550 fractionHuman-Virus-4 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark Human-Virus-4: Human-Virus-4 genomic embedding evaluation
DNABERT-2V measure0.548 unitlessHVR-p2p Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark HVR-p2p: HVR-p2p genomic embedding evaluation
DNABERT-2V measure0.243 unitlessHVR-s2s-align Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark HVR-s2s-align: HVR-s2s-align genomic embedding evaluation
DNABERT-2V measure0.373 unitlessHVR-s2s-small Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark HVR-s2s-small: HVR-s2s-small genomic embedding evaluation
DNABERT-2V measure0.753 unitlessHVR-s2s-tiny Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-2 on Gene-MTEB genomic embedding benchmark HVR-s2s-tiny: HVR-s2s-tiny genomic embedding evaluation
DNABERT-SAccuracy0.486 fractionHMPD-disease Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark HMPD-disease: HMPD-disease genomic embedding evaluation
DNABERT-SAccuracy0.367 fractionHMPD-sex Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark HMPD-sex: HMPD-sex genomic embedding evaluation
DNABERT-SAccuracy0.293 fractionHMPD-single Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark HMPD-single: HMPD-single genomic embedding evaluation
DNABERT-SAccuracy0.465 fractionHMPD-source Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark HMPD-source: HMPD-source genomic embedding evaluation
DNABERT-SV measure0.580 unitlessHMPR-p2p Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark HMPR-p2p: HMPR-p2p genomic embedding evaluation
DNABERT-SV measure0.129 unitlessHMPR-s2s-align Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark HMPR-s2s-align: HMPR-s2s-align genomic embedding evaluation
DNABERT-SV measure0.421 unitlessHMPR-s2s-small Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark HMPR-s2s-small: HMPR-s2s-small genomic embedding evaluation
DNABERT-SV measure0.274 unitlessHMPR-s2s-tiny Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark HMPR-s2s-tiny: HMPR-s2s-tiny genomic embedding evaluation
DNABERT-SAccuracy0.605 fractionHuman-Virus-1 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark Human-Virus-1: Human-Virus-1 genomic embedding evaluation
DNABERT-SAccuracy0.510 fractionHuman-Virus-2 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark Human-Virus-2: Human-Virus-2 genomic embedding evaluation
DNABERT-SAccuracy0.612 fractionHuman-Virus-3 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark Human-Virus-3: Human-Virus-3 genomic embedding evaluation
DNABERT-SAccuracy0.551 fractionHuman-Virus-4 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark Human-Virus-4: Human-Virus-4 genomic embedding evaluation
DNABERT-SV measure0.550 unitlessHVR-p2p Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark HVR-p2p: HVR-p2p genomic embedding evaluation
DNABERT-SV measure0.241 unitlessHVR-s2s-align Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark HVR-s2s-align: HVR-s2s-align genomic embedding evaluation
DNABERT-SV measure0.372 unitlessHVR-s2s-small Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark HVR-s2s-small: HVR-s2s-small genomic embedding evaluation
DNABERT-SV measure0.753 unitlessHVR-s2s-tiny Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)DNABERT-S on Gene-MTEB genomic embedding benchmark HVR-s2s-tiny: HVR-s2s-tiny genomic embedding evaluation
METAGENE-1Accuracy0.542 fractionHMPD-disease Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark HMPD-disease: HMPD-disease genomic embedding evaluation
METAGENE-1Accuracy0.495 fractionHMPD-sex Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark HMPD-sex: HMPD-sex genomic embedding evaluation
METAGENE-1Accuracy0.297 fractionHMPD-single Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark HMPD-single: HMPD-single genomic embedding evaluation
METAGENE-1Accuracy0.526 fractionHMPD-source Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark HMPD-source: HMPD-source genomic embedding evaluation
METAGENE-1V measure0.479 unitlessHMPR-p2p Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark HMPR-p2p: HMPR-p2p genomic embedding evaluation
METAGENE-1V measure0.140 unitlessHMPR-s2s-align Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark HMPR-s2s-align: HMPR-s2s-align genomic embedding evaluation
METAGENE-1V measure0.432 unitlessHMPR-s2s-small Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark HMPR-s2s-small: HMPR-s2s-small genomic embedding evaluation
METAGENE-1V measure0.855 unitlessHMPR-s2s-tiny Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark HMPR-s2s-tiny: HMPR-s2s-tiny genomic embedding evaluation
METAGENE-1Accuracy0.828 fractionHuman-Virus-1 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark Human-Virus-1: Human-Virus-1 genomic embedding evaluation
METAGENE-1Accuracy0.742 fractionHuman-Virus-2 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark Human-Virus-2: Human-Virus-2 genomic embedding evaluation
METAGENE-1Accuracy0.835 fractionHuman-Virus-3 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark Human-Virus-3: Human-Virus-3 genomic embedding evaluation
METAGENE-1Accuracy0.697 fractionHuman-Virus-4 Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark Human-Virus-4: Human-Virus-4 genomic embedding evaluation
METAGENE-1V measure0.466 unitlessHVR-p2p Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark HVR-p2p: HVR-p2p genomic embedding evaluation
METAGENE-1V measure0.267 unitlessHVR-s2s-align Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark HVR-s2s-align: HVR-s2s-align genomic embedding evaluation
METAGENE-1V measure0.467 unitlessHVR-s2s-small Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark HVR-s2s-small: HVR-s2s-small genomic embedding evaluation
METAGENE-1V measure1.000 unitlessHVR-s2s-tiny Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)METAGENE-1 on Gene-MTEB genomic embedding benchmark HVR-s2s-tiny: HVR-s2s-tiny genomic embedding evaluation
NT-2.5b-1000gAccuracy0.489 fractionHMPD-disease Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)NT-2.5b-1000g on Gene-MTEB genomic embedding benchmark HMPD-disease: HMPD-disease genomic embedding evaluation
NT-2.5b-1000gAccuracy0.476 fractionHMPD-sex Gene-MTEB data used in METAGENE-1 Table 3 (Gene-MTEB genomic embedding benchmark split)NT-2.5b-1000g on Gene-MTEB genomic embedding benchmark HMPD-sex: HMPD-sex genomic embedding evaluation

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Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statementOriginal source and locationReview and provenance
Artifact SHA-256
a426c77d137138cfc33410a1e54a1cce521007bdc9e3176f4774d0105424a7fe
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METAGENE-1 v1: Gene-MTEB complete component tasks

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Version: arXiv:2501.02045v1
Retrieved: 2026-09-23T11:22:00.101850+00:00

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https://arxiv.org/html/2501.02045v1
Source metadata
METAGENE-1 v1: Gene-MTEB complete component tasks

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Version: arXiv:2501.02045v1
Retrieved: 2026-09-23T11:22:00.101850+00:00

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2026-09-23T11:22:00.101850+00:00
Source metadata
METAGENE-1 v1: Gene-MTEB complete component tasks

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Version: arXiv:2501.02045v1
Retrieved: 2026-09-23T11:22:00.101850+00:00

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Url
https://arxiv.org/html/2501.02045v1
Source metadata
METAGENE-1 v1: Gene-MTEB complete component tasks

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Venue
arXiv
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METAGENE-1 v1: Gene-MTEB complete component tasks

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arXiv:2501.02045v1
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METAGENE-1 v1: Gene-MTEB complete component tasks

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Version: arXiv:2501.02045v1
Retrieved: 2026-09-23T11:22:00.101850+00:00

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METAGENE-1 v1: Gene-MTEB complete component tasks

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Version: arXiv:2501.02045v1
Retrieved: 2026-09-23T11:22:00.101850+00:00

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Source artifact SHA-256: a426c77d137138cfc33410a1e54a1cce521007bdc9e3176f4774d0105424a7fe

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Inspected artifact

Facets: areas
1 values
  • dna-genomes
Source metadata
METAGENE-1 v1: Gene-MTEB complete component tasks

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Version: arXiv:2501.02045v1
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Field: facets.areas

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Record ID
coverage-source-metagene-paper-v1
Source metadata
METAGENE-1 v1: Gene-MTEB complete component tasks

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source
Source metadata
METAGENE-1 v1: Gene-MTEB complete component tasks

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Retrieved: 2026-09-23T11:22:00.101850+00:00

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Stable ID: coverage-source-metagene-paper-v1

areas
dna-genomes
url
https://arxiv.org/html/2501.02045v1
artifact url
https://arxiv.org/html/2501.02045v1
artifact sha256
a426c77d137138cfc33410a1e54a1cce521007bdc9e3176f4774d0105424a7fe
retrieved at
2026-09-23T11:22:00.101850+00:00
venue
arXiv
version
arXiv:2501.02045v1
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