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1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: PredFull retrained on PROSPECT (PepSpecBench) | Protocol: PepSpecBench A. thaliana OOD subset, median SA Dataset: PepSpecBench A. thaliana OOD subset | 0.163 Spectral angle (median over spectra, shared canonical fragment space) unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcePredFull (trained on PROSPECT) on A. thaliana OOD subset, SA lit-otheromics-20261011-pepspecbench-protocol-a-thaliana-sa Aggregation: Not reported PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction · Table 4, block 'PROSPECT Trained', row 'PredFull', column 'A. thaliana' (first value of SA / SAS) |
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PepSpecBench A. thaliana OOD subset, median SA
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18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Retrained on PROSPECT; no adaptation to the evaluation set Context-only references | PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction Table 4, block 'PROSPECT Trained', row 'PredFull', column 'A. thaliana' (first value of SA / SAS) Version: arXiv:2605.01945v1 (submitted 2026-05-03), arXiv HTML rendering | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Median over spectra Context-only references | PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction Table 4, block 'PROSPECT Trained', row 'PredFull', column 'A. thaliana' (first value of SA / SAS) Version: arXiv:2605.01945v1 (submitted 2026-05-03), arXiv HTML rendering | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction Table 4, block 'PROSPECT Trained', row 'PredFull', column 'A. thaliana' (first value of SA / SAS) Version: arXiv:2605.01945v1 (submitted 2026-05-03), arXiv HTML rendering | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version PepSpecBench v1 Context-only references | PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction Table 4, block 'PROSPECT Trained', row 'PredFull', column 'A. thaliana' (first value of SA / SAS) Version: arXiv:2605.01945v1 (submitted 2026-05-03), arXiv HTML rendering | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs Peptide sequence with PTMs, precursor charge and NCE Context-only references | PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction Table 4, block 'PROSPECT Trained', row 'PredFull', column 'A. thaliana' (first value of SA / SAS) Version: arXiv:2605.01945v1 (submitted 2026-05-03), arXiv HTML rendering | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: metric implementation SA in the shared canonical fragment space Context-only references | PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction Table 4, block 'PROSPECT Trained', row 'PredFull', column 'A. thaliana' (first value of SA / SAS) Version: arXiv:2605.01945v1 (submitted 2026-05-03), arXiv HTML rendering | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: population Not reported Context-only references | PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction Table 4, block 'PROSPECT Trained', row 'PredFull', column 'A. thaliana' (first value of SA / SAS) Version: arXiv:2605.01945v1 (submitted 2026-05-03), arXiv HTML rendering | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: protocol id lit-otheromics-20261011-pepspecbench-protocol-a-thaliana-sa Context-only references | PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction Table 4, block 'PROSPECT Trained', row 'PredFull', column 'A. thaliana' (first value of SA / SAS) Version: arXiv:2605.01945v1 (submitted 2026-05-03), arXiv HTML rendering | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: split OOD (zero-shot) Context-only references | PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction Table 4, block 'PROSPECT Trained', row 'PredFull', column 'A. thaliana' (first value of SA / SAS) Version: arXiv:2605.01945v1 (submitted 2026-05-03), arXiv HTML rendering | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Origin independent_paper Context-only references | PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction Table 4, block 'PROSPECT Trained', row 'PredFull', column 'A. thaliana' (first value of SA / SAS) Version: arXiv:2605.01945v1 (submitted 2026-05-03), arXiv HTML rendering | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-23-5347695500ed · Record review: source checked
Stable ID: lit-otheromics-20261011-pepspecbench-eval-predfull-trained-prospect-a-thaliana-sa