Published comparison transcribed from the pinned source; not reproduced.
1 evaluation · 2 results. Different protocols are not a single leaderboard.
Protocol: KIBA drug-target affinity, DeepDTA holdout fold · Dataset: KIBA holdout test fold (DeepDTA split)
Sorted by Concordance index (KIBA DeepDTA holdout fold) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Concordance index (KIBA DeepDTA holdout fold) | MSE (KIBA DeepDTA holdout fold) |
|---|---|---|
| PLM-GraphDTA with ProstT5 protein and GCN drug representationEvaluation | 0.902 | 0.124 |
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: PLM-GraphDTA with ProstT5 protein and GCN drug representation | Protocol: KIBA drug-target affinity, DeepDTA holdout fold Dataset: KIBA holdout test fold (DeepDTA split) | 0.902 Concordance index (KIBA DeepDTA holdout fold) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePLM-GraphDTA (ProstT5; GCN) on KIBA lit-interactions-20261011-plmdta-protocol-kiba-deepdta-holdout Aggregation: Not reported Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction · Table 3, row 'PLM-GraphDTA' with protein 'ProstT5' and drug 'GCN', column 'CI' (text-layer line 597) |
| Configuration: PLM-GraphDTA with ProstT5 protein and GCN drug representation | Protocol: KIBA drug-target affinity, DeepDTA holdout fold Dataset: KIBA holdout test fold (DeepDTA split) | 0.124 MSE (KIBA DeepDTA holdout fold) unit-unreported · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePLM-GraphDTA (ProstT5; GCN) on KIBA lit-interactions-20261011-plmdta-protocol-kiba-deepdta-holdout Aggregation: Not reported Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction · Table 3, row 'PLM-GraphDTA' with protein 'ProstT5' and drug 'GCN', column 'MSE' (text-layer line 597) |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
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KIBA drug-target affinity, DeepDTA holdout fold
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18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Trained on all five training folds Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 3 row 'PLM-GraphDTA', protein 'ProstT5', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Mean over 5 random seeds Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 3 row 'PLM-GraphDTA', protein 'ProstT5', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 3 row 'PLM-GraphDTA', protein 'ProstT5', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | missing or unspecified No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version DeepDTA split Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 3 row 'PLM-GraphDTA', protein 'ProstT5', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs Protein sequence (padded or truncated to 1000 residues) and drug SMILES or graph Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 3 row 'PLM-GraphDTA', protein 'ProstT5', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: metric implementation CI and MSE as printed Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 3 row 'PLM-GraphDTA', protein 'ProstT5', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: population Not reported Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 3 row 'PLM-GraphDTA', protein 'ProstT5', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | missing or unspecified No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: protocol id lit-interactions-20261011-plmdta-protocol-kiba-deepdta-holdout Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 3 row 'PLM-GraphDTA', protein 'ProstT5', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: split Holdout test fold Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 3 row 'PLM-GraphDTA', protein 'ProstT5', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Origin author_reported Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 3 row 'PLM-GraphDTA', protein 'ProstT5', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-interactions-20261011-plmdta-eval-plm-graphdta-prostt5-gcn-kiba