Published comparison transcribed from the pinned source; not reproduced.
1 evaluation · 2 results. Different protocols are not a single leaderboard.
Protocol: Davis drug-target affinity, DeepDTA holdout fold · Dataset: Davis holdout test fold (DeepDTA split)
Sorted by Concordance index (Davis DeepDTA holdout fold) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Concordance index (Davis DeepDTA holdout fold) | MSE (Davis DeepDTA holdout fold) |
|---|---|---|
| GraphDTA with 1D conv. protein and GCN drug representationEvaluation | 0.88 | 0.237 |
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: GraphDTA with 1D conv. protein and GCN drug representation | Protocol: Davis drug-target affinity, DeepDTA holdout fold Dataset: Davis holdout test fold (DeepDTA split) | 0.88 Concordance index (Davis DeepDTA holdout fold) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGraphDTA (1D conv.; GCN) on Davis lit-interactions-20261011-plmdta-protocol-davis-deepdta-holdout Aggregation: Not reported Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction · Table 2, row 'GraphDTA' with protein '1D conv.' and drug 'GCN', column 'CI' (text-layer line 523) |
| Configuration: GraphDTA with 1D conv. protein and GCN drug representation | Protocol: Davis drug-target affinity, DeepDTA holdout fold Dataset: Davis holdout test fold (DeepDTA split) | 0.237 MSE (Davis DeepDTA holdout fold) unit-unreported · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGraphDTA (1D conv.; GCN) on Davis lit-interactions-20261011-plmdta-protocol-davis-deepdta-holdout Aggregation: Not reported Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction · Table 2, row 'GraphDTA' with protein '1D conv.' and drug 'GCN', column 'MSE' (text-layer line 523) |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
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Davis drug-target affinity, DeepDTA holdout fold
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18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Trained by the study authors on the DeepDTA training folds of the corrected Davis set (Appendix A) Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 2 row 'GraphDTA', protein '1D conv.', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded independent paper Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Not reported Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 2 row 'GraphDTA', protein '1D conv.', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | missing or unspecified No individual claim review recorded independent paper Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 2 row 'GraphDTA', protein '1D conv.', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | missing or unspecified No individual claim review recorded independent paper Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version DeepDTA split Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 2 row 'GraphDTA', protein '1D conv.', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded independent paper Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs Protein sequence (padded or truncated to 1000 residues) and drug SMILES or graph Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 2 row 'GraphDTA', protein '1D conv.', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded independent paper Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: metric implementation CI and MSE as printed Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 2 row 'GraphDTA', protein '1D conv.', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded independent paper Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: population Not reported Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 2 row 'GraphDTA', protein '1D conv.', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | missing or unspecified No individual claim review recorded independent paper Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: protocol id lit-interactions-20261011-plmdta-protocol-davis-deepdta-holdout Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 2 row 'GraphDTA', protein '1D conv.', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded independent paper Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: split Holdout test fold Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 2 row 'GraphDTA', protein '1D conv.', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded independent paper Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Origin independent_paper Context-only references | Comprehensive Evaluation of Protein Language Model Embeddings for Drug-Target Affinity Prediction Table 2 row 'GraphDTA', protein '1D conv.', drug 'GCN' Version: bioRxiv 10.64898/2026.08.31.748056v1 (posted 2026-09-03); 24-page PDF | not individually reviewed No individual claim review recorded independent paper Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-interactions-20261011-plmdta-eval-graphdta-1d-conv-gcn-davis