Published comparison transcribed from the pinned source; not reproduced.
1 evaluation · 4 results. Different protocols are not a single leaderboard.
Protocol: GFMBench-API Var Bench Common Vs Rare, supervised · Dataset: Var Bench Common Vs Rare test set (GFMBench-API)
Sorted by Accuracy (test set) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Accuracy (test set) | AUPRC (test set) | AUROC (test set) | MCC (test set) |
|---|---|---|---|---|
| Evo2 (linear probing, GFMBench-API)Evaluation | 0.515 | 0.518 | 0.524 | 0.039 |
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Evo2 (linear probing, GFMBench-API) | Protocol: GFMBench-API Var Bench Common Vs Rare, supervised Dataset: Var Bench Common Vs Rare test set (GFMBench-API) | 0.515 Accuracy (test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2 on GFMBench-API Var Bench Common Vs Rare (supervised) lit-genomics-20261011-gfmbench-protocol-var-bench-common-vs-rare-supervised Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 2, task 'Var Bench Common Vs Rare', row 'Evo2', column 'Accuracy' |
| Configuration: Evo2 (linear probing, GFMBench-API) | Protocol: GFMBench-API Var Bench Common Vs Rare, supervised Dataset: Var Bench Common Vs Rare test set (GFMBench-API) | 0.518 AUPRC (test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2 on GFMBench-API Var Bench Common Vs Rare (supervised) lit-genomics-20261011-gfmbench-protocol-var-bench-common-vs-rare-supervised Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 2, task 'Var Bench Common Vs Rare', row 'Evo2', column 'AUPRC' |
| Configuration: Evo2 (linear probing, GFMBench-API) | Protocol: GFMBench-API Var Bench Common Vs Rare, supervised Dataset: Var Bench Common Vs Rare test set (GFMBench-API) | 0.524 AUROC (test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2 on GFMBench-API Var Bench Common Vs Rare (supervised) lit-genomics-20261011-gfmbench-protocol-var-bench-common-vs-rare-supervised Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 2, task 'Var Bench Common Vs Rare', row 'Evo2', column 'AUROC' |
| Configuration: Evo2 (linear probing, GFMBench-API) | Protocol: GFMBench-API Var Bench Common Vs Rare, supervised Dataset: Var Bench Common Vs Rare test set (GFMBench-API) | 0.039 MCC (test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2 on GFMBench-API Var Bench Common Vs Rare (supervised) lit-genomics-20261011-gfmbench-protocol-var-bench-common-vs-rare-supervised Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 2, task 'Var Bench Common Vs Rare', row 'Evo2', column 'MCC' |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.
Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.
Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
GFMBench-API Var Bench Common Vs Rare, supervised
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation linear probing Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Table 2, task 'Var Bench Common Vs Rare', model 'Evo2' Version: bioRxiv preprint version 2, posted 2026-08-11 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Not reported Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Table 2, task 'Var Bench Common Vs Rare', model 'Evo2' Version: bioRxiv preprint version 2, posted 2026-08-11 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Table 2, task 'Var Bench Common Vs Rare', model 'Evo2' Version: bioRxiv preprint version 2, posted 2026-08-11 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version Not reported Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Table 2, task 'Var Bench Common Vs Rare', model 'Evo2' Version: bioRxiv preprint version 2, posted 2026-08-11 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs DNA sequence windows; task-specific context length Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Table 2, task 'Var Bench Common Vs Rare', model 'Evo2' Version: bioRxiv preprint version 2, posted 2026-08-11 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: metric implementation GFMBench-API task metrics Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Table 2, task 'Var Bench Common Vs Rare', model 'Evo2' Version: bioRxiv preprint version 2, posted 2026-08-11 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: population Not reported Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Table 2, task 'Var Bench Common Vs Rare', model 'Evo2' Version: bioRxiv preprint version 2, posted 2026-08-11 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: protocol id lit-genomics-20261011-gfmbench-protocol-var-bench-common-vs-rare-supervised Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Table 2, task 'Var Bench Common Vs Rare', model 'Evo2' Version: bioRxiv preprint version 2, posted 2026-08-11 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: split Test split Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Table 2, task 'Var Bench Common Vs Rare', model 'Evo2' Version: bioRxiv preprint version 2, posted 2026-08-11 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Origin independent_paper Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Table 2, task 'Var Bench Common Vs Rare', model 'Evo2' Version: bioRxiv preprint version 2, posted 2026-08-11 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-genomics-20261011-gfmbench-eval-evo2-linear-probing-var-bench-common-vs-rare-supervised