Published comparison transcribed from the pinned source; not reproduced.
1 evaluation · 6 results. Different protocols are not a single leaderboard.
Protocol: DNALONGBENCH Transcription initiation signal prediction (Table 6) · Dataset: DNALONGBENCH Transcription initiation signal prediction test set
Sorted by Pearson (average over TISP conditions as printed) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Pearson (average over TISP conditions as printed) | Pearson (EC (ENCODE CAGE)) | Pearson (ER (ENCODE RAMPAGE)) | Pearson (FC (FANTOM CAGE)) | Pearson (GC (GRO-cap)) | Pearson (PC (PRO-cap)) |
|---|---|---|---|---|---|---|
| Caduceus-PS (DNALONGBENCH)Evaluation | 0.108 | 0.088 | 0.09 | 0.113 | 0.102 | 0.156 |
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Transcription initiation signal prediction (Table 6) Dataset: DNALONGBENCH Transcription initiation signal prediction test set | 0.108 Pearson (average over TISP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH TISP lit-genomics-20261011-dnalongbench-protocol-tisp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 6, row 'Caduceus-PS', column 'Avg' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Transcription initiation signal prediction (Table 6) Dataset: DNALONGBENCH Transcription initiation signal prediction test set | 0.088 Pearson (EC (ENCODE CAGE)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH TISP lit-genomics-20261011-dnalongbench-protocol-tisp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 6, row 'Caduceus-PS', column 'EC' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Transcription initiation signal prediction (Table 6) Dataset: DNALONGBENCH Transcription initiation signal prediction test set | 0.09 Pearson (ER (ENCODE RAMPAGE)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH TISP lit-genomics-20261011-dnalongbench-protocol-tisp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 6, row 'Caduceus-PS', column 'ER' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Transcription initiation signal prediction (Table 6) Dataset: DNALONGBENCH Transcription initiation signal prediction test set | 0.113 Pearson (FC (FANTOM CAGE)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH TISP lit-genomics-20261011-dnalongbench-protocol-tisp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 6, row 'Caduceus-PS', column 'FC' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Transcription initiation signal prediction (Table 6) Dataset: DNALONGBENCH Transcription initiation signal prediction test set | 0.102 Pearson (GC (GRO-cap)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH TISP lit-genomics-20261011-dnalongbench-protocol-tisp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 6, row 'Caduceus-PS', column 'GC' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Transcription initiation signal prediction (Table 6) Dataset: DNALONGBENCH Transcription initiation signal prediction test set | 0.156 Pearson (PC (PRO-cap)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH TISP lit-genomics-20261011-dnalongbench-protocol-tisp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 6, row 'Caduceus-PS', column 'PC' |
Source checking is not independent reproduction. Release 2026-10-23-5347695500ed.
0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.
Release 2026-10-23-5347695500ed · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.
Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
DNALONGBENCH Transcription initiation signal prediction (Table 6)
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Fine-tuned Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Table 6 row 'Caduceus-PS' Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Not reported Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Table 6 row 'Caduceus-PS' Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Table 6 row 'Caduceus-PS' Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version Not reported Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Table 6 row 'Caduceus-PS' Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs DNA sequence Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Table 6 row 'Caduceus-PS' Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: metric implementation Not reported Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Table 6 row 'Caduceus-PS' Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: population Not reported Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Table 6 row 'Caduceus-PS' Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: protocol id lit-genomics-20261011-dnalongbench-protocol-tisp Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Table 6 row 'Caduceus-PS' Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: split Held-out test set Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Table 6 row 'Caduceus-PS' Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Origin independent_paper Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Table 6 row 'Caduceus-PS' Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-23-5347695500ed · Record review: source checked
Stable ID: lit-genomics-20261011-dnalongbench-eval-caduceus-ps-tisp