Result

Pearson (EC (ENCODE CAGE)) of Caduceus-PS (DNALONGBENCH) on DNALONGBENCH Transcription initiation signal prediction test set

0.088 Pearson (EC (ENCODE CAGE))

Methods

Tested configuration: Caduceus-PS (DNALONGBENCH)
Protocol: DNALONGBENCH Transcription initiation signal prediction (Table 6)
Dataset: DNALONGBENCH Transcription initiation signal prediction test set
Procedure: DNALONGBENCH Transcription initiation signal prediction (Table 6)
Evaluation: Caduceus-PS on DNALONGBENCH TISP
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not reported by the source
Evidence: Independent external evaluation · source checkedDNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 6, row 'Caduceus-PS', column 'EC'

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split: Held-out test set
Adaptation: Fine-tuned
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-10-23-5347695500ed
Property and statement	Original source and location	Review and provenance
Reported result 0.088 Individual claims	DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Original source ↗ Table 6, row 'Caduceus-PS', column 'EC' Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML Retrieved: 2026-10-11T01:34:19Z	source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-11 independent paper Audit details Extraction: Parsed the <td> cells of the pinned PMC XML table with tools/extract_dnalongbench.py; header rows and model labels asserted. Table 6, row 'Caduceus-PS', column 'EC' Independent review 2026-10-11: value, locator, metric, unit, direction and linked configuration and protocol checked; corrections from the review applied by the extractor as listed in review.md. Field: `attributes.printed_value` Source artifact SHA-256: `0d7db21f2a843dda3ba703c53cd0abad12c9c795cfbcf4fd1bdc6c4a863fe41b` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `0d7db21f2a843dda3ba703c53cd0abad12c9c795cfbcf4fd1bdc6c4a863fe41b` Extraction artifact

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Sources and history

Release 2026-10-23-5347695500ed · Record review: source checked

1 source record and release history

DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Original source · Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML

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Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-dnalongbench-result-caduceus-ps-tisp-ec

metric: pearson-correlation
metric direction: higher
unit: unitless
printed value: 0.088
source locator: Table 6, row 'Caduceus-PS', column 'EC'
review: method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Re-fetched the PMC XML and matched its SHA-256; an independent <td> parse of Tables 3-7 matched all 135 printed and numeric values and locators.; reviewer: claude; reviewer note: Claude review agent reviewer-gen-3, independent of the extractor lit-genomics; no human review claimed; date: 2026-10-11; artifact sha256: 0d7db21f2a843dda3ba703c53cd0abad12c9c795cfbcf4fd1bdc6c4a863fe41b; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12627797/fullTextXML; note: Extraction: Parsed the <td> cells of the pinned PMC XML table with tools/extract_dnalongbench.py; header rows and model labels asserted. Table 6, row 'Caduceus-PS', column 'EC' Independent review 2026-10-11: value, locator, metric, unit, direction and linked configuration and protocol checked; corrections from the review applied by the extractor as listed in review.md.
numeric value: 0.088
metric qualifier: EC (ENCODE CAGE)
missing metadata: uncertainty: reason: unreported

Related records

evaluation: Caduceus-PS on DNALONGBENCH TISP

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