rewire.itbenchmarks
Evaluation

NT-2500M-multi on GUE EPIGENETIC-MARKS-PREDICTION-H4: Epigenetic marks prediction, dataset H4

GUE evaluation of NT-2500M-multi on Epigenetic marks prediction, dataset H4, scored with MCC.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

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  • score semantics: verification is missing
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Verified: Not verified

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  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
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  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

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Run locally

A pinned recipe describes the inputs, environment and resource requirements.

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Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

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Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: NT-2500M-multiTask: GUE EPIGENETIC-MARKS-PREDICTION-H4: Epigenetic marks prediction, dataset H4
Dataset subset: GUE Epigenetic marks prediction, H4 (GUE split)
81.7% mcc
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NT-2500M-multi on GUE EPIGENETIC-MARKS-PREDICTION-H4: Epigenetic marks prediction, dataset H4

Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Aggregation: Not reported

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Evaluation procedure

Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Configuration
NT-2500M-multi
Task
GUE EPIGENETIC-MARKS-PREDICTION-H4: Epigenetic marks prediction, dataset H4
Dataset subset
GUE Epigenetic marks prediction, H4 (GUE split)
origin
Author-reported evaluation
configuration
Not reported
protocol id
gue-task-epigenetic-marks-prediction-h4
metric implementation
MCC

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split
Not reported
Adaptation
Not reported
Scoring implementation
MCC

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

10 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.comparison.metric_implementation
MCC
Context-only references
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes

Original source ↗

Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183387+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.metric_implementation

Source artifact SHA-256: 49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.protocol_id
gue-task-epigenetic-marks-prediction-h4
Context-only references
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes

Original source ↗

Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183387+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.protocol_id

Source artifact SHA-256: 49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.origin
author_reported
Context-only references
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes

Original source ↗

Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183387+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.origin

Source artifact SHA-256: 49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.protocol
Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.
Context-only references
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes

Original source ↗

Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183387+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.protocol

Source artifact SHA-256: 49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.source_locator
Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)
Context-only references
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes

Original source ↗

Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183387+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

description
GUE evaluation of NT-2500M-multi on Epigenetic marks prediction, dataset H4, scored with MCC.
Context-only references
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes

Original source ↗

Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183387+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: description

Source artifact SHA-256: 49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Relationship: benchmark
gue-task-epigenetic-marks-prediction-h4
Context-only references
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes

Original source ↗

Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183387+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:benchmark:gue-task-epigenetic-marks-prediction-h4

Source artifact SHA-256: 49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Relationship: dataset
gue-dataset-gue-epigenetic-marks-prediction-h4
Context-only references
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes

Original source ↗

Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183387+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:dataset:gue-dataset-gue-epigenetic-marks-prediction-h4

Source artifact SHA-256: 49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Relationship: model
gue-method-nt-2500m-multi
Context-only references
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes

Original source ↗

Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183387+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:model:gue-method-nt-2500m-multi

Source artifact SHA-256: 49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

name
NT-2500M-multi on GUE EPIGENETIC-MARKS-PREDICTION-H4: Epigenetic marks prediction, dataset H4
Context-only references
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes

Original source ↗

Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183387+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: name

Source artifact SHA-256: 49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: gue-evaluation-nt-2500m-multi-epigenetic-marks-prediction-h4

areas
dna-genomes
tasks
Epigenetic marks prediction, dataset H4
origin
author_reported
protocol
Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.
comparison
protocol id: gue-task-epigenetic-marks-prediction-h4; metric implementation: MCC
missing metadata
checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
source locator
Table 6, row(NT-2500M-multi), column(Epigenetic marks prediction H4)
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