GUE evaluation of DNABERT (5-mer) on Epigenetic marks prediction, dataset H3K4me3, scored with MCC.
These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.
Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.
Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
1 evaluation · 1 result. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DNABERT (5-mer) | Task: GUE EPIGENETIC-MARKS-PREDICTION-H3K4ME3: Epigenetic marks prediction, dataset H3K4me3 Dataset subset: GUE Epigenetic marks prediction, H3K4me3 (GUE split) | 27.1% mcc percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceFine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Aggregation: Not reported DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT (5-mer)), column(Epigenetic marks prediction H3K4me3) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation MCC Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT (5-mer)), column(Epigenetic marks prediction H3K4me3) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id gue-task-epigenetic-marks-prediction-h3k4me3 Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT (5-mer)), column(Epigenetic marks prediction H3K4me3) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT (5-mer)), column(Epigenetic marks prediction H3K4me3) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12. Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT (5-mer)), column(Epigenetic marks prediction H3K4me3) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 6, row(DNABERT (5-mer)), column(Epigenetic marks prediction H3K4me3) Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT (5-mer)), column(Epigenetic marks prediction H3K4me3) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description GUE evaluation of DNABERT (5-mer) on Epigenetic marks prediction, dataset H3K4me3, scored with MCC. Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT (5-mer)), column(Epigenetic marks prediction H3K4me3) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark gue-task-epigenetic-marks-prediction-h3k4me3 Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT (5-mer)), column(Epigenetic marks prediction H3K4me3) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset gue-dataset-gue-epigenetic-marks-prediction-h3k4me3 Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT (5-mer)), column(Epigenetic marks prediction H3K4me3) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model gue-method-dnabert-5-mer Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT (5-mer)), column(Epigenetic marks prediction H3K4me3) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name DNABERT (5-mer) on GUE EPIGENETIC-MARKS-PREDICTION-H3K4ME3: Epigenetic marks prediction, dataset H3K4me3 Context-only references | DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Table 6, row(DNABERT (5-mer)), column(Epigenetic marks prediction H3K4me3) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: gue-evaluation-dnabert-5-mer-epigenetic-marks-prediction-h3k4me3