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Evaluation

NTv3 8M training GPU-hours (Boshar et al. 2025 Table 5)

Published result; transcribed, not reproduced.

Evaluation results

1 evaluation · 3 results. Different protocols are not a single leaderboard.

Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5) · Dataset: NTv3 training data, all stages (Boshar et al. 2025)

Sorted by Accelerator time (Training stage 'Length ext. 1-4' (200B tokens)) (lower is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configurationAccelerator time (Training stage 'Length ext. 1-4' (200B tokens))Accelerator time (Training stage 'Length ext. 5-7' (150B tokens))Accelerator time (Training stage 'Pre-training 8 kb' (10.5T tokens))
NTv3 8M training run (Boshar et al. 2025)Evaluation40401,608
All 3 result rows with coverage, uncertainty and sources
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Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: NTv3 8M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
40 Accelerator time (Training stage 'Length ext. 1-4' (200B tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 8M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '8M', column 'Length ext. 1-4'
Configuration: NTv3 8M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
40 Accelerator time (Training stage 'Length ext. 5-7' (150B tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 8M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '8M', column 'Length ext. 5-7'
Configuration: NTv3 8M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
1,608 Accelerator time (Training stage 'Pre-training 8 kb' (10.5T tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 8M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '8M', column 'Pre-training 8 kb'

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

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Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified

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  • Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

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Investigate discrepancies

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Missing or unresolved evidence

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  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified
  • Sample annotations are recorded: not yet verified
  • Dependence between samples is assessed: not yet verified

Verified: Not verified

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A pinned recipe describes the inputs, environment and resource requirements.

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Verified: Not verified

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Missing or unresolved evidence

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  • Overlap with training data is checked: not yet verified

Verified: Not verified

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Evaluation procedure

NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)

Configuration
NTv3 8M training run (Boshar et al. 2025)
Protocol
NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset
NTv3 training data, all stages (Boshar et al. 2025)
origin
Author-reported evaluation
configuration
Primary source as retrieved 2026-10-14
dataset version
Not reported
split
Not applicable
population
Training tokens as in the Table 5 header
inputs
Genomic sequence
adaptation
Training from scratch through each stage
metric implementation
Not reported
aggregation
Total per stage
budget
Not reported
protocol id
gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split
Not applicable
Adaptation
Training from scratch through each stage
Scoring implementation
Not reported

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Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

19 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statementOriginal source and locationReview and provenance
Comparison: adaptation
Training from scratch through each stage
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.adaptation

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Comparison: aggregation
Total per stage
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.aggregation

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Comparison: budget
Not reported
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

missing or unspecified

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.budget

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Comparison: dataset version
Not reported
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

missing or unspecified

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.dataset_version

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Comparison: inputs
Genomic sequence
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.inputs

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Comparison: metric implementation
Not reported
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

missing or unspecified

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.metric_implementation

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Comparison: population
Training tokens as in the Table 5 header
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.population

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Comparison: protocol id
gfm-guide-20261014-protocol-ntv3-training-gpu-hours
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.protocol_id

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Comparison: split
Not applicable
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.split

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Origin
author_reported
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.origin

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: gfm-guide-20261014-eval-ntv3-8m-training-gpu-hours

areas
dna-genomes
contexts
research
origin
author_reported
protocol
gfm-guide-20261014-protocol-ntv3-training-gpu-hours
version
Primary source as retrieved 2026-10-14
comparison
dataset version: Not reported; split: Not applicable; population: Training tokens as in the Table 5 header; inputs: Genomic sequence; adaptation: Training from scratch through each stage; metric implementation: Not reported; aggregation: Total per stage; budget: Not reported; protocol id: gfm-guide-20261014-protocol-ntv3-training-gpu-hours
source locator
Table 5 (page 34)
missing metadata
comparison.budget: reason: unreported; comparison.dataset version: reason: unreported; comparison.metric implementation: reason: unreported
training hardware
NVIDIA H100 80GB (8 per node)
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