rewirebio.iobenchmarks
Dataset

NTv3 training data, all stages (Boshar et al. 2025)

Multi-species genomes for pre-training (8 kb sequences, 10.5T tokens), length extension and functional-track post-training.

Evaluation results

3 evaluations · 13 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: NTv3 100M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
40 Accelerator time (Training stage 'Length ext. 1-4' (200B tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 100M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '100M', column 'Length ext. 1-4'
Configuration: NTv3 100M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
48 Accelerator time (Training stage 'Length ext. 5-7' (150B tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 100M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '100M', column 'Length ext. 5-7'
Configuration: NTv3 100M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
1,536 Accelerator time (Training stage 'Post-training 1' (1.2T tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 100M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '100M', column 'Post-training 1'
Configuration: NTv3 100M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
192 Accelerator time (Training stage 'Post-training 2' (54B tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 100M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '100M', column 'Post-training 2'
Configuration: NTv3 100M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
3,000 Accelerator time (Training stage 'Pre-training 8 kb' (10.5T tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 100M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '100M', column 'Pre-training 8 kb'
Configuration: NTv3 650M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
88 Accelerator time (Training stage 'Length ext. 1-4' (200B tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 650M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '650M', column 'Length ext. 1-4'
Configuration: NTv3 650M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
80 Accelerator time (Training stage 'Length ext. 5-7' (150B tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 650M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '650M', column 'Length ext. 5-7'
Configuration: NTv3 650M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
1,824 Accelerator time (Training stage 'Post-training 1' (1.2T tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 650M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '650M', column 'Post-training 1'
Configuration: NTv3 650M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
192 Accelerator time (Training stage 'Post-training 2' (54B tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 650M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '650M', column 'Post-training 2'
Configuration: NTv3 650M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
6,736 Accelerator time (Training stage 'Pre-training 8 kb' (10.5T tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 650M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '650M', column 'Pre-training 8 kb'
Configuration: NTv3 8M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
40 Accelerator time (Training stage 'Length ext. 1-4' (200B tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 8M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '8M', column 'Length ext. 1-4'
Configuration: NTv3 8M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
40 Accelerator time (Training stage 'Length ext. 5-7' (150B tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 8M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '8M', column 'Length ext. 5-7'
Configuration: NTv3 8M training run (Boshar et al. 2025)Protocol: NTv3 H100 GPU-hours per training stage (Boshar et al. 2025 Table 5)
Dataset: NTv3 training data, all stages (Boshar et al. 2025)
1,608 Accelerator time (Training stage 'Pre-training 8 kb' (10.5T tokens))
hour · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NTv3 8M training GPU-hours (Boshar et al. 2025 Table 5)

gfm-guide-20261014-protocol-ntv3-training-gpu-hours

Aggregation: Not reported

A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1 · Table 5 (page 34), row '8M', column 'Pre-training 8 kb'

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified
  • Sample annotations are recorded: not yet verified
  • Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • A pinned run recipe exists: not yet verified
  • Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Independent validation data exist: not yet verified
  • Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

5 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statementOriginal source and locationReview and provenance
Population
Tokens per stage: pre-training 10.5T, length extension 1-4 200B, length extension 5-7 150B, post-training 1 1.2T, post-training 2 54B (Table 5 header)
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 column headers (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.population

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Source location
Table 5 column headers (page 34)
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 column headers (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Split
Not applicable: training compute
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 column headers (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.split

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Description
Multi-species genomes for pre-training (8 kb sequences, 10.5T tokens), length extension and functional-track post-training.
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 column headers (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Name
NTv3 training data, all stages (Boshar et al. 2025)
Context-only references
A foundational model for joint sequence-function multi-species modeling at scale for long-range genomic prediction (NTv3), bioRxiv v1

Original source ↗

Table 5 column headers (page 34)

Version: bioRxiv v1, posted 2025-12-25 (dated 2025-12-22 on the title page)
Retrieved: 2026-10-14T12:05:27Z

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 374a7177ebf75bf9ce6398624a74e4d588581d54a13ba12263d146b194b961ea

Hash scope: SHA-256 of one retrieval of the bioRxiv PDF (2026-10-14T12:05:27Z). bioRxiv stamps the PDF on each download (XMP ModifyDate, MetadataDate, DocumentID and InstanceID, the Info ModDate and the trailer /ID), so later retrievals differ. The extractor's copy was not retained, so the pinned bytes could not be re-verified. The independent reviewer's retrieval on 2026-10-14 (15,535,038 bytes, 107 pages, ModDate D:20261014041002-07'00') had SHA-256 082ea9b096d634cad3fc568465ef887d2529060909777685261cfc0bb43fcbee; all 13 Table 5 cells and the quoted section 4.4.4 and Results sentences match in that copy.

Inspected artifact

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: gfm-guide-20261014-data-ntv3-training-corpus

areas
dna-genomes
contexts
research
population
Tokens per stage: pre-training 10.5T, length extension 1-4 200B, length extension 5-7 150B, post-training 1 1.2T, post-training 2 54B (Table 5 header)
split
Not applicable: training compute
source locator
Table 5 column headers (page 34)
missing metadata
version: reason: unextracted; note: Corpus composition is described elsewhere in the preprint and not extracted here
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