GEARS Norman2019 CPA-control comparison evaluation of CPA on Norman2019 perturbation-response MSE, scored with Mean squared error.
1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: CPA | Protocol: GEARS Norman2019 CPA-control comparison MSE: Norman2019 perturbation-response MSE Dataset subset: Norman et al.2019 perturbation data used in GEARS Supplementary Table6 (GEARS Norman2019 CPA-control comparison split) | 0.354 ± 0.049 MSE unit-unreported · lower Uncertainty: ± 0.049 (type not stated). Printed ± spread; SD/SE/CI type not established by inspected table caption. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCPA on GEARS Norman2019 CPA-control comparison MSE: Norman2019 perturbation-response MSE Predict post-perturbation expression on Norman2019. MSE compares predicted and true expression; Pearson DE compares predicted versus true change over unperturbed controls (Supplementary Table1). Exact Table6 scoring gene subset and split manifest remain unextracted. Aggregation: Not reported GEARS primary supplement, Table6 · Supplementary Table6, printed p34 / PDF p35, row CPA, column MSE |
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Predict post-perturbation expression on Norman2019. MSE compares predicted and true expression; Pearson DE compares predicted versus true change over unperturbed controls (Supplementary Table1). Exact Table6 scoring gene subset and split manifest remain unextracted.
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13 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Adaptation Trained perturbation-response models on Norman2019; CPA+KG adds an MLP over one-hop knowledge-graph neighbors (Supplementary Note5). GEARS training hyperparameters are in Supplementary Note22. No Perturb is a no-change control. Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row CPA, column MSE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: metric implementation Mean squared error Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row CPA, column MSE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: protocol id gears-2023-supp-table6-task-mse Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row CPA, column MSE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Evaluation group id gears-2023-supp-table6-method-cpa-gears-2023-supp-table6-dataset-norman-et-al-2019-perturbation-data-used-in-gears-supplementary-table6-evaluation-setup Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row CPA, column MSE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Evidence overlap One source-table comparison with two metrics per evaluated configuration. No Perturb matches Table5; these are not additional independent runs. Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row CPA, column MSE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Origin author_reported Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row CPA, column MSE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Protocol Predict post-perturbation expression on Norman2019. MSE compares predicted and true expression; Pearson DE compares predicted versus true change over unperturbed controls (Supplementary Table1). Exact Table6 scoring gene subset and split manifest remain unextracted. Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row CPA, column MSE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Supplementary Table6, printed p34 / PDF p35, row CPA, column MSE Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row CPA, column MSE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description GEARS Norman2019 CPA-control comparison evaluation of CPA on Norman2019 perturbation-response MSE, scored with Mean squared error. Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row CPA, column MSE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: assessment gears-2023-supp-table6-task-mse Context-only references | GEARS primary supplement, Table6 Supplementary Table6, printed p34 / PDF p35, row CPA, column MSE Version: 10.1038/s41587-023-01905-6 publisher supplement | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Stable ID: gears-2023-supp-table6-evaluation-cpa-mse