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1 evaluation · 4 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: ProkBERT-mini | Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) Dataset: E. coli sigma70 promoter dataset | 0.87 Accuracy unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceProkBERT-mini: E. coli sigma70 promoter prediction Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Aggregation: Not reported ProkBERT family: genomic language models for microbiome applications; ProkBERT family: genomic language models for microbiome applications · Table 3, ProkBERT-mini row, Accuracy column |
| Configuration: ProkBERT-mini | Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) Dataset: E. coli sigma70 promoter dataset | 0.9 Sensitivity fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceProkBERT-mini: E. coli sigma70 promoter prediction Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Aggregation: Not reported ProkBERT family: genomic language models for microbiome applications · Table 3, row ProkBERT-mini, column Sensitivity; XML row2 column4 |
| Configuration: ProkBERT-mini | Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) Dataset: E. coli sigma70 promoter dataset | 0.85 Specificity fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceProkBERT-mini: E. coli sigma70 promoter prediction Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Aggregation: Not reported ProkBERT family: genomic language models for microbiome applications · Table 3, row ProkBERT-mini, column Specificity; XML row2 column5 |
| Configuration: ProkBERT-mini | Protocol: E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction) Dataset: E. coli sigma70 promoter dataset | 0.74 MCC dimensionless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceProkBERT-mini: E. coli sigma70 promoter prediction Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training. Aggregation: Not reported ProkBERT family: genomic language models for microbiome applications · Table 3, row ProkBERT-mini, column MCC; XML row2 column3 |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
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38 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Specificity, E. coli sigma70 independent promoter test Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC10810988.1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Specificity, E. coli sigma70 independent promoter test Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC10810988.1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Specificity, E. coli sigma70 independent promoter test Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC10810988.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.aggregation Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Specificity, E. coli sigma70 independent promoter test Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC10810988.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Specificity, E. coli sigma70 independent promoter test Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC10810988.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.budget Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Specificity, E. coli sigma70 independent promoter test Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC10810988.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Specificity, E. coli sigma70 independent promoter test Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC10810988.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.dataset_version Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Specificity, E. coli sigma70 independent promoter test Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC10810988.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Specificity, E. coli sigma70 independent promoter test Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC10810988.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.inputs Not reported Context-only references | ProkBERT family: genomic language models for microbiome applications Table 3: Specificity, E. coli sigma70 independent promoter test Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC10810988.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: evaluation-lit-033