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Evaluation

DNABERT-2: regulatory element identification

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

Evidence incomplete

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Verified: Not verified

Evidence incomplete

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  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

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Verified: Not verified

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Verified: Not verified

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Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: DNABERT-2Task: regulatory element identification
Dataset: DART-Eval cCREs versus matched shuffled controls
0.876 accuracy
fraction · unknown

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

DNABERT-2: regulatory element identification

zero-shot likelihood ranking: higher likelihood for cCRE than matched control

Aggregation: Not reported

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3 (PDF page 5), DNABERT-2 row, Zero-Shot Accuracy column

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Evaluation procedure

zero-shot likelihood ranking: higher likelihood for cCRE than matched control

Configuration
DNABERT-2
Task
regulatory element identification
Dataset
DART-Eval cCREs versus matched shuffled controls
origin
Independent external evaluation
configuration
not stated in table
protocol id
Not reported
dataset version
Not reported
split
paper evaluation
population
Not reported
inputs
Not reported
adaptation
Not reported
metric implementation
Not reported
aggregation
Not reported
budget
Not reported

Metadata review: needs review. Unreported conditions prevent automatic comparisons.

Reproduction

Split
paper evaluation
Adaptation
Not reported
Scoring implementation
Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

17 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.comparison.adaptation
Not reported
Context-only references
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA

Original source ↗

No field-specific location recorded

Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings
Retrieved: 2026-09-16T10:38:57.558203+00:00

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.adaptation

Source artifact SHA-256: e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.aggregation
Not reported
Context-only references
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA

Original source ↗

No field-specific location recorded

Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings
Retrieved: 2026-09-16T10:38:57.558203+00:00

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.aggregation

Source artifact SHA-256: e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.budget
Not reported
Context-only references
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA

Original source ↗

No field-specific location recorded

Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings
Retrieved: 2026-09-16T10:38:57.558203+00:00

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.budget

Source artifact SHA-256: e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.dataset_version
Not reported
Context-only references
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA

Original source ↗

No field-specific location recorded

Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings
Retrieved: 2026-09-16T10:38:57.558203+00:00

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.dataset_version

Source artifact SHA-256: e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.inputs
Not reported
Context-only references
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA

Original source ↗

No field-specific location recorded

Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings
Retrieved: 2026-09-16T10:38:57.558203+00:00

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.inputs

Source artifact SHA-256: e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.metric_implementation
Not reported
Context-only references
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA

Original source ↗

No field-specific location recorded

Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings
Retrieved: 2026-09-16T10:38:57.558203+00:00

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.metric_implementation

Source artifact SHA-256: e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.population
Not reported
Context-only references
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA

Original source ↗

No field-specific location recorded

Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings
Retrieved: 2026-09-16T10:38:57.558203+00:00

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.population

Source artifact SHA-256: e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.protocol_id
Not reported
Context-only references
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA

Original source ↗

No field-specific location recorded

Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings
Retrieved: 2026-09-16T10:38:57.558203+00:00

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.protocol_id

Source artifact SHA-256: e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.comparison.split
paper evaluation
Context-only references
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA

Original source ↗

No field-specific location recorded

Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings
Retrieved: 2026-09-16T10:38:57.558203+00:00

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.split

Source artifact SHA-256: e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.origin
independent_paper
Context-only references
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA

Original source ↗

No field-specific location recorded

Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings
Retrieved: 2026-09-16T10:38:57.558203+00:00

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.origin

Source artifact SHA-256: e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: needs review

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: evaluation-b2-dart-eval-regulatory-2024

areas
dna-genomes
tasks
regulatory element identification
origin
independent_paper
protocol
zero-shot likelihood ranking: higher likelihood for cCRE than matched control
version
not stated in table
comparison
protocol id: Not reported; dataset version: Not reported; split: paper evaluation; population: Not reported; inputs: Not reported; adaptation: Not reported; metric implementation: Not reported; aggregation: Not reported; budget: Not reported
missing metadata
dataset version: not_reported_in_legacy_extract
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