Result

Accuracy of DNABERT-2 on DART-Eval cCREs versus matched shuffled controls

0.876 Accuracy

Methods

Tested configuration: DNABERT-2
Task: regulatory element identification
Dataset: DART-Eval cCREs versus matched shuffled controls
Related family profiles: DNABERT-2
Procedure: zero-shot likelihood ranking: higher likelihood for cCRE than matched control
Evaluation: DNABERT-2: regulatory element identification
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not yet extracted
Evidence: Independent external evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3 (PDF page 5), DNABERT-2 row, Zero-Shot Accuracy column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: paper evaluation
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Printed value 0.876 Individual claims	DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Original source ↗ Table 3 (PDF page 5), DNABERT-2 row, Zero-Shot Accuracy column Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings Retrieved: 2026-09-16T10:38:57.558203+00:00	source checked ["ai-assisted-source-review"] · 2026-09-16T10:38:57.558203+00:00 independent paper Audit details Inspected the pinned NeurIPS primary PDF table and explanatory text. The DNABERT-2 row reports 0.876 under Zero-Shot Accuracy. The caption defines this as pairwise prioritization of positives over matched controls, distinct from supervised absolute accuracy. Field: `attributes.printed_value` Claim: claim-b2-dart-eval-regulatory-2024 Source artifact SHA-256: `e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22` Extraction artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

1 source record and release history

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · NeurIPS 2024 Datasets and Benchmarks Track proceedings

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Technical metadata and extraction receipts

Stable ID: b2-dart-eval-regulatory-2024

areas: dna-genomes
tasks: regulatory element identification
printed value: 0.876
numeric value: 0.876
metric: accuracy
metric direction: unknown
unit: fraction
source locator: Table 3 (PDF page 5), DNABERT-2 row, Zero-Shot Accuracy column
review: method: ai-assisted-source-review; reviewer: codex; reviewed at: 2026-09-16T10:38:57.558203+00:00; evidence: DNABERT-2; zero-shot accuracy 0.876; probed absolute/paired 0.847/0.943; fine-tuned absolute/paired 0.913/0.973.; artifact sha256: e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22; retrieval url: https://proceedings.neurips.cc/paper_files/paper/2024/file/71998bfc3217ffe1cca1ee084dfadadd-Paper-Datasets_and_Benchmarks_Track.pdf; method note: independent; table-level review; reviewer note: role: secondary table review; note: Inspected the pinned NeurIPS primary PDF table and explanatory text. The DNABERT-2 row reports 0.876 under Zero-Shot Accuracy. The caption defines this as pairwise prioritization of positives over matched controls, distinct from supervised absolute accuracy.
legacy id: b2-dart-eval-regulatory-2024
missing metadata: dataset version: reason: unextracted; uncertainty: reason: unextracted

Related records

evaluation: DNABERT-2: regulatory element identification
subject: Reported accuracy for DNABERT-2

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