Result

0.876 accuracy

DNABERT-2 · accuracy · DART-Eval cCREs versus matched shuffled controls

Tested configuration: DNABERT-2
Task: regulatory element identification
Dataset: DART-Eval cCREs versus matched shuffled controls
Related family profiles: DNABERT-2
Procedure: zero-shot likelihood ranking: higher likelihood for cCRE than matched control
Evaluation: DNABERT-2: regulatory element identification
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Independent external evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3 (PDF page 5), DNABERT-2 row, Zero-Shot Accuracy column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: paper evaluation
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: regulatory element identification

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 0.876 Individual claims	DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Original source ↗ Table 3 (PDF page 5), DNABERT-2 row, Zero-Shot Accuracy column Version: NeurIPS 2024 Datasets and Benchmarks Track proceedings Retrieved: 2026-09-16T10:38:57.558203+00:00	source checked independent ai table review · 2026-09-16T10:38:57.558203+00:00 independent paper Audit details Inspected the pinned NeurIPS primary PDF table and explanatory text. The DNABERT-2 row reports 0.876 under Zero-Shot Accuracy. The caption defines this as pairwise prioritization of positives over matched controls, distinct from supervised absolute accuracy. Field: `attributes.printed_value` Claim: claim-b2-dart-eval-regulatory-2024 Source artifact SHA-256: `e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22` Extraction artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · NeurIPS 2024 Datasets and Benchmarks Track proceedings

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Technical metadata and extraction receipts

Stable ID: b2-dart-eval-regulatory-2024

areas: dna-genomes
tasks: regulatory element identification
printed value: 0.876
numeric value: 0.876
metric: accuracy
metric direction: unknown
unit: fraction
uncertainty: Not reported
source locator: Table 3 (PDF page 5), DNABERT-2 row, Zero-Shot Accuracy column
review: method: independent_ai_table_review; reviewer: Codex secondary table review; reviewed at: 2026-09-16T10:38:57.558203+00:00; notes: Inspected the pinned NeurIPS primary PDF table and explanatory text. The DNABERT-2 row reports 0.876 under Zero-Shot Accuracy. The caption defines this as pairwise prioritization of positives over matched controls, distinct from supervised absolute accuracy.; evidence: DNABERT-2; zero-shot accuracy 0.876; probed absolute/paired 0.847/0.943; fine-tuned absolute/paired 0.913/0.973.; artifact sha256: e5aee5b1f7cc6fd961b1d2a131d02cf243b79e091d5e418fbabee7fde9b39b22; retrieval url: https://proceedings.neurips.cc/paper_files/paper/2024/file/71998bfc3217ffe1cca1ee084dfadadd-Paper-Datasets_and_Benchmarks_Track.pdf
legacy id: b2-dart-eval-regulatory-2024
legacy row: id: b2-dart-eval-regulatory-2024; paper id: dart-eval-regulatory-2024; domain id: dna-genomes; task: regulatory element identification; model: DNABERT-2; model version: not stated in table; dataset: DART-Eval cCREs versus matched shuffled controls; dataset version: Not reported; split: paper evaluation; metric: accuracy; value: 0.876; unit: fraction; uncertainty: Not reported; protocol: zero-shot likelihood ranking: higher likelihood for cCRE than matched control; source locator: Table 3, DNABERT-2 row, Zero-Shot Accuracy column; source url: https://proceedings.neurips.cc/paper_files/paper/2024/file/71998bfc3217ffe1cca1ee084dfadadd-Paper-Datasets_and_Benchmarks_Track.pdf; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:33:26Z
missing metadata: dataset version: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: DNABERT-2: regulatory element identification
subject: Reported accuracy for DNABERT-2

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