Published comparison; transcribed, not reproduced.
These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.
Release 2026-10-09-8cc1db47c7f9 · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.
Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
1 evaluation · 1 result. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: CelFiE (Sun et al. 2024 benchmark) | Protocol: Sun et al. 2024 liver cancer detection from deconvolved plasma WGBS (ROC-AUC) Dataset: Plasma cfDNA WGBS, 24 liver cancer patients and 32 healthy individuals (EGAD00001000856) | 0.93 auroc unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCelFiE deconvolution, disease detection AUC (liver cancer WGBS) ctdnameth-20261009-protocol-sun2024-hcc-wgbs-detection-auc Aggregation: Not reported Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA; Sun et al. 2024, Additional file 1 (Tables S1-S8) · Sun Additional file 1, sheet 'Table S7 ', J4; row 'Liver cancer (WGBS)'; column 'CelFiE' under 'AUC values' |
Source checking is not independent reproduction. Release 2026-10-09-8cc1db47c7f9.
ctdnameth-20261009-protocol-sun2024-hcc-wgbs-detection-auc
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
38 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Not reported Context-only references | Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA Additional file 1 Table S7, cell J4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Genome Biology 25:318, published 2024-12-19; PMC11660681.1 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.adaptation Not reported Context-only references | Sun et al. 2024, Additional file 1 (Tables S1-S8) Additional file 1 Table S7, cell J4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2024_3456_MOESM1_ESM.xlsx) of Genome Biology 25:318 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation One AUC per cancer-type comparison Context-only references | Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA Additional file 1 Table S7, cell J4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Genome Biology 25:318, published 2024-12-19; PMC11660681.1 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation One AUC per cancer-type comparison Context-only references | Sun et al. 2024, Additional file 1 (Tables S1-S8) Additional file 1 Table S7, cell J4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2024_3456_MOESM1_ESM.xlsx) of Genome Biology 25:318 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA Additional file 1 Table S7, cell J4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Genome Biology 25:318, published 2024-12-19; PMC11660681.1 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Sun et al. 2024, Additional file 1 (Tables S1-S8) Additional file 1 Table S7, cell J4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2024_3456_MOESM1_ESM.xlsx) of Genome Biology 25:318 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version Reprocessed by Sun et al. 2024 (hg38, Bismark v0.24.2) Context-only references | Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA Additional file 1 Table S7, cell J4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Genome Biology 25:318, published 2024-12-19; PMC11660681.1 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version Reprocessed by Sun et al. 2024 (hg38, Bismark v0.24.2) Context-only references | Sun et al. 2024, Additional file 1 (Tables S1-S8) Additional file 1 Table S7, cell J4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2024_3456_MOESM1_ESM.xlsx) of Genome Biology 25:318 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Estimated fractions of 35 reference cell types from each deconvolution method Context-only references | Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA Additional file 1 Table S7, cell J4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Genome Biology 25:318, published 2024-12-19; PMC11660681.1 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Estimated fractions of 35 reference cell types from each deconvolution method Context-only references | Sun et al. 2024, Additional file 1 (Tables S1-S8) Additional file 1 Table S7, cell J4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2024_3456_MOESM1_ESM.xlsx) of Genome Biology 25:318 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
Stable ID: ctdnameth-20261009-eval-sun2024-celfie-hcc-wgbs