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1 evaluation · 6 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.003 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, M6; row 'EpiDISH_CP_eq'; column '10M' under 'RRBS-CL' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.003 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, N6; row 'EpiDISH_CP_eq'; column '15M' under 'RRBS-CL' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.003 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, O6; row 'EpiDISH_CP_eq'; column '20M' under 'RRBS-CL' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.007 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, K6; row 'EpiDISH_CP_eq'; column '2M' under 'RRBS-CL' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.003 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, L6; row 'EpiDISH_CP_eq'; column '5M' under 'RRBS-CL' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.003 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet B, D5; row 'EpiDISH_CP_eq'; column 'RRBS-CL' |
Source checking is not independent reproduction. Release 2026-10-09-8cc1db47c7f9.
ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
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38 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Not reported Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Supplementary Table 3 sheet A row 6 columns K-O; sheet B cell D5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.comparison.adaptation Not reported Context-only references | Giuili et al. 2025, Supplementary Table 3 (median limit of detection) Supplementary Table 3 sheet A row 6 columns K-O; sheet B cell D5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv version 1 supplementary file media-5.xlsx | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation Median over combinations at each sequencing depth (sheet A) and overall per dataset (sheet B) Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Supplementary Table 3 sheet A row 6 columns K-O; sheet B cell D5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.comparison.aggregation Median over combinations at each sequencing depth (sheet A) and overall per dataset (sheet B) Context-only references | Giuili et al. 2025, Supplementary Table 3 (median limit of detection) Supplementary Table 3 sheet A row 6 columns K-O; sheet B cell D5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv version 1 supplementary file media-5.xlsx | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Supplementary Table 3 sheet A row 6 columns K-O; sheet B cell D5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.comparison.budget Not reported Context-only references | Giuili et al. 2025, Supplementary Table 3 (median limit of detection) Supplementary Table 3 sheet A row 6 columns K-O; sheet B cell D5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv version 1 supplementary file media-5.xlsx | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version bioRxiv version 1 mixtures Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Supplementary Table 3 sheet A row 6 columns K-O; sheet B cell D5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.comparison.dataset_version bioRxiv version 1 mixtures Context-only references | Giuili et al. 2025, Supplementary Table 3 (median limit of detection) Supplementary Table 3 sheet A row 6 columns K-O; sheet B cell D5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv version 1 supplementary file media-5.xlsx | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Aligned bisulfite reads of each mixture; reference DMR matrix from three DMR tools Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Supplementary Table 3 sheet A row 6 columns K-O; sheet B cell D5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.comparison.inputs Aligned bisulfite reads of each mixture; reference DMR matrix from three DMR tools Context-only references | Giuili et al. 2025, Supplementary Table 3 (median limit of detection) Supplementary Table 3 sheet A row 6 columns K-O; sheet B cell D5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv version 1 supplementary file media-5.xlsx | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
Stable ID: ctdnameth-20261009-eval-giuili2025-houseman-eq-rrbs-cl