In silico tumour-in-plasma read mixtures with known tumour fraction (Giuili et al. 2025).
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5 evaluations · 30 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: CelFiE (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.001 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCelFiE tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, M3; row 'CelFiE'; column '10M' under 'RRBS-CL' |
| Configuration: CelFiE (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.001 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCelFiE tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, N3; row 'CelFiE'; column '15M' under 'RRBS-CL' |
| Configuration: CelFiE (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.001 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCelFiE tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, O3; row 'CelFiE'; column '20M' under 'RRBS-CL' |
| Configuration: CelFiE (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.0010* limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCelFiE tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, K3; row 'CelFiE'; column '2M' under 'RRBS-CL' |
| Configuration: CelFiE (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.001 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCelFiE tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, L3; row 'CelFiE'; column '5M' under 'RRBS-CL' |
| Configuration: CelFiE (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.001 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCelFiE tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet B, D4; row 'CelFiE'; column 'RRBS-CL' |
| Configuration: EpiDISH_RPC (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.1 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_RPC tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, M11; row 'EpiDISH_RPC'; column '10M' under 'RRBS-CL' |
| Configuration: EpiDISH_RPC (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.1 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_RPC tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, N11; row 'EpiDISH_RPC'; column '15M' under 'RRBS-CL' |
| Configuration: EpiDISH_RPC (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.1 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_RPC tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, O11; row 'EpiDISH_RPC'; column '20M' under 'RRBS-CL' |
| Configuration: EpiDISH_RPC (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.1 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_RPC tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, K11; row 'EpiDISH_RPC'; column '2M' under 'RRBS-CL' |
| Configuration: EpiDISH_RPC (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.1 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_RPC tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, L11; row 'EpiDISH_RPC'; column '5M' under 'RRBS-CL' |
| Configuration: EpiDISH_RPC (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.1 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_RPC tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet B, D7; row 'EpiDISH_RPC'; column 'RRBS-CL' |
| Configuration: EpiSCORE (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.05 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiSCORE tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, M10; row 'EpiSCORE'; column '10M' under 'RRBS-CL' |
| Configuration: EpiSCORE (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.05 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiSCORE tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, N10; row 'EpiSCORE'; column '15M' under 'RRBS-CL' |
| Configuration: EpiSCORE (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.05 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiSCORE tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, O10; row 'EpiSCORE'; column '20M' under 'RRBS-CL' |
| Configuration: EpiSCORE (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.1 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiSCORE tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, K10; row 'EpiSCORE'; column '2M' under 'RRBS-CL' |
| Configuration: EpiSCORE (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.05 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiSCORE tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, L10; row 'EpiSCORE'; column '5M' under 'RRBS-CL' |
| Configuration: EpiSCORE (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.05 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiSCORE tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet B, D8; row 'EpiSCORE'; column 'RRBS-CL' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.003 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, M6; row 'EpiDISH_CP_eq'; column '10M' under 'RRBS-CL' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.003 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, N6; row 'EpiDISH_CP_eq'; column '15M' under 'RRBS-CL' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.003 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, O6; row 'EpiDISH_CP_eq'; column '20M' under 'RRBS-CL' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.007 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, K6; row 'EpiDISH_CP_eq'; column '2M' under 'RRBS-CL' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.003 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, L6; row 'EpiDISH_CP_eq'; column '5M' under 'RRBS-CL' |
| Configuration: EpiDISH_CP_eq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.003 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_eq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet B, D5; row 'EpiDISH_CP_eq'; column 'RRBS-CL' |
| Configuration: EpiDISH_CP_ineq (DecoNFlow benchmark) | Protocol: DecoNFlow RRBS-CL tumour-fraction limit of detection Dataset: DecoNFlow benchmark RRBS-CL in silico mixtures | 0.003 limit-of-detection fraction · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEpiDISH_CP_ineq tumour-fraction LoD (RRBS-CL) ctdnameth-20261009-protocol-giuili2025-rrbs-cl-tumour-fraction-lod Aggregation: Not reported A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow; Giuili et al. 2025, Supplementary Table 3 (median limit of detection) · Supplementary Table 3 sheet A, M5; row 'EpiDISH_CP_ineq'; column '10M' under 'RRBS-CL' |
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
8 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.population 440 cfRRBS in silico mixtures: reads from neuroblastoma cell line CLB-GA artificial cfDNA mixed into healthy plasma cfDNA reads Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.scope_note Proxy for patient plasma: tumour reads come from tissue or a cell line, not from patient cfDNA. Counts in the preprint do not reconcile: the abstract and Methods state 3,690 mixtures; the Results dataset counts (1,640, 1,550 and 440) sum to 3,630; the Methods arithmetic gives 1,600, 1,500 and 500 tumour mixtures plus 40, 50 and 50 healthy replicates (3,740). Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.source_locator Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.split Five depths (2M, 5M, 10M, 15M, 20M aligned reads), tumour fractions from 0.01% to 50% plus 0%, ten replicates each (Methods); Results prints 440 samples, which this design does not give Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.total 440 Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| attributes.version bioRxiv version 1 (2025-11-27); mixtures generated with SillyMix v1.1.0 Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| description In silico tumour-in-plasma read mixtures with known tumour fraction (Giuili et al. 2025). Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
| name DecoNFlow benchmark RRBS-CL in silico mixtures Context-only references | A benchmark of DNA methylation deconvolution methods for tumoral fraction estimation using DecoNFlow Preprint Results 'Benchmarking datasets generation' (page 5); Methods; Supplementary Table 2D Version: bioRxiv preprint version 1, posted 2025-11-27; not peer reviewed | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Not reproducible by re-download: bioRxiv rewrites the PDF on each download (ModDate and XMP dates set to the download time). A copy retrieved 2026-10-09T20:21:09Z has the same length (7,728,127 bytes) and SHA-256 fa7bcf8c25532f86dc99ed7d76a13a49ae70e29ab9f46559b3e0972e86aa9b96; resetting its three date stamps to any time on that day does not give the pinned hash, so another per-download field also differs. No result value is taken from this PDF. |
Release 2026-10-09-ba02f2f4a36e · Record review: source checked
Stable ID: ctdnameth-20261009-data-giuili2025-rrbs-cl-in-silico-mixtures