Published comparison transcribed from the pinned source; not reproduced.
1 evaluation · 6 results. Different protocols are not a single leaderboard.
Protocol: Exon-level CNV detection in clinical exomes against CMA truth, default calls (Hwang et al. Table 4, pre-filter) · Dataset: Korea University clinical exomes with CMA reference CNVs (Hwang et al. 2026)
Sorted by False negatives (exon level) (lower is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | False negatives (exon level) | False positives (exon level) | Precision (exon level) | Recall (exon level) | True positives (exon level) | Count (exon level; reference CMA CNV exons in the evaluated set) |
|---|---|---|---|---|---|---|
| CNVkit v0.9.7, pre-filter (Hwang et al. 2026)Evaluation | 941 | 17,340 | 0.096 | 0.662 | 1847 | 2788 |
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18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Not reported Context-only references | Improving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) Table 4 column 'CNVkit' / 'Pre-filter' Version: Genes 17(1):105, published 2026-01-19; PMC12841491 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Pooled over 39 individuals Context-only references | Improving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) Table 4 column 'CNVkit' / 'Pre-filter' Version: Genes 17(1):105, published 2026-01-19; PMC12841491 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | Improving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) Table 4 column 'CNVkit' / 'Pre-filter' Version: Genes 17(1):105, published 2026-01-19; PMC12841491 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version Korea University clinical WES and CMA, January 2021 to June 2023 (as published) Context-only references | Improving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) Table 4 column 'CNVkit' / 'Pre-filter' Version: Genes 17(1):105, published 2026-01-19; PMC12841491 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs Clinical exome alignments (GRCh37) Context-only references | Improving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) Table 4 column 'CNVkit' / 'Pre-filter' Version: Genes 17(1):105, published 2026-01-19; PMC12841491 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: metric implementation Exon-level sensitivity TP/(TP+FN) and PPV TP/(TP+FP) (Methods 2.4) Context-only references | Improving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) Table 4 column 'CNVkit' / 'Pre-filter' Version: Genes 17(1):105, published 2026-01-19; PMC12841491 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: population 39 CMA-positive individuals; 98 reference CNVs, 2,788 reference exons before filtering Context-only references | Improving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) Table 4 column 'CNVkit' / 'Pre-filter' Version: Genes 17(1):105, published 2026-01-19; PMC12841491 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: protocol id cnv-20261011-hwang2026-protocol-pre-filter Context-only references | Improving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) Table 4 column 'CNVkit' / 'Pre-filter' Version: Genes 17(1):105, published 2026-01-19; PMC12841491 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: split No split Context-only references | Improving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) Table 4 column 'CNVkit' / 'Pre-filter' Version: Genes 17(1):105, published 2026-01-19; PMC12841491 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Origin independent_paper Context-only references | Improving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) Table 4 column 'CNVkit' / 'Pre-filter' Version: Genes 17(1):105, published 2026-01-19; PMC12841491 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Stable ID: cnv-20261011-hwang2026-eval-pre-filter-cnvkit