Result

True positives (exon level) of CNVkit v0.9.7, pre-filter (Hwang et al. 2026) on Korea University clinical exomes with CMA reference CNVs (Hwang et al. 2026)

1850 True positives (exon level)

Methods

Tested configuration: CNVkit v0.9.7, pre-filter (Hwang et al. 2026)
Protocol: Exon-level CNV detection in clinical exomes against CMA truth, default calls (Hwang et al. Table 4, pre-filter)
Dataset: Korea University clinical exomes with CMA reference CNVs (Hwang et al. 2026)
Procedure: Exon-level CNV detection in clinical exomes against CMA truth, default calls (Hwang et al. Table 4, pre-filter)
Evaluation: CNVkit (pre-filter) on 39 clinical exomes against CMA truth
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not reported by the source
Evidence: Independent external evaluation · source checkedImproving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) · Table 4, row 'TP', column 'CNVkit' / 'Pre-filter'

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split: No split
Adaptation: Not reported
Scoring implementation: Exon-level sensitivity TP/(TP+FN) and PPV TP/(TP+FP) (Methods 2.4)

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Reported result 1847 Individual claims	Improving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) Original source ↗ Table 4, row 'TP', column 'CNVkit' / 'Pre-filter' Version: Genes 17(1):105, published 2026-01-19; PMC12841491 full-text XML Retrieved: 2026-10-11T21:36:59Z	source checked ["source-hash-verification","independent-cell-check","automated-source-review"] · 2026-10-12 independent paper Audit details Checked by reviewer-scnv against the pinned source; verdict in docs/reviews/use-cases/splicing-cnv-use-cases-2026-10-12.md and in this batch's review.md. Field: `attributes.printed_value` Source artifact SHA-256: `ff82a186d0adcf319b603a1100427ec0f6ed95becf040b512d0aef5e515bdc5d` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `ff82a186d0adcf319b603a1100427ec0f6ed95becf040b512d0aef5e515bdc5d` Extraction artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

1 source record and release history

Improving CNV Detection Performance Except for Software-Specific Problematic Regions (Hwang et al., Genes 2026) · Original source · Genes 17(1):105, published 2026-01-19; PMC12841491 full-text XML

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Technical metadata and extraction receipts

Stable ID: cnv-20261011-hwang2026-result-pre-filter-cnvkit-tp

metric: true-positive-count
metric direction: higher
unit: count
printed value: 1847
source locator: Table 4, row 'TP', column 'CNVkit' / 'Pre-filter'
review: method: source-hash-verification; independent-cell-check; automated-source-review; reviewer: claude; reviewer note: Independent Claude review agent reviewer-scnv; did not extract this batch; no human review claimed; date: 2026-10-12; artifact sha256: ff82a186d0adcf319b603a1100427ec0f6ed95becf040b512d0aef5e515bdc5d; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12841491/fullTextXML; method note: Parsed the pinned PMC12841491 article XML (table-wrap genes-17-00105-t004) with a stdlib reader; caption, both header rows and six row labels asserted; printed cell text kept exactly, thousands separators removed only in numeric_value.; note: Checked by reviewer-scnv against the pinned source; verdict in docs/reviews/use-cases/splicing-cnv-use-cases-2026-10-12.md and in this batch's review.md.
numeric value: 1847
metric qualifier: exon level
unit detail: exons
missing metadata: uncertainty: reason: unreported

Related records

evaluation: CNVkit (pre-filter) on 39 clinical exomes against CMA truth

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