rewire.itbenchmarks
Dataset subset

BM5 Enzyme Table1 cohort

Component structures downloaded from BM5; docking uses balanced coefficients.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-30-e37e3ab1284d · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • recipe pinned: verification is missing
  • resource estimate: verification is missing

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

2 evaluations · 22 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top10
Dataset subset: BM5 Enzyme Table1 cohort
51 targets_with_acceptable_or_better_model
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top10

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, first (top10) row; Good models Number
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top10
Dataset subset: BM5 Enzyme Table1 cohort
3 acceptable_or_better_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top10

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, first (top10) row; difficult column; acceptable_or_better_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top10
Dataset subset: BM5 Enzyme Table1 cohort
0 high_accuracy_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top10

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, first (top10) row; difficult column; high_accuracy_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top10
Dataset subset: BM5 Enzyme Table1 cohort
1 medium_accuracy_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top10

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, first (top10) row; difficult column; medium_accuracy_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top10
Dataset subset: BM5 Enzyme Table1 cohort
44 acceptable_or_better_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top10

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, first (top10) row; easy column; acceptable_or_better_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top10
Dataset subset: BM5 Enzyme Table1 cohort
2 high_accuracy_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top10

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, first (top10) row; easy column; high_accuracy_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top10
Dataset subset: BM5 Enzyme Table1 cohort
18 medium_accuracy_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top10

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, first (top10) row; easy column; medium_accuracy_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top10
Dataset subset: BM5 Enzyme Table1 cohort
4 acceptable_or_better_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top10

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, first (top10) row; intermediate column; acceptable_or_better_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top10
Dataset subset: BM5 Enzyme Table1 cohort
0 high_accuracy_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top10

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, first (top10) row; intermediate column; high_accuracy_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top10
Dataset subset: BM5 Enzyme Table1 cohort
2 medium_accuracy_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top10

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, first (top10) row; intermediate column; medium_accuracy_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top10
Dataset subset: BM5 Enzyme Table1 cohort
58% success_at_10
percent · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top10

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, first (top10) row; Good models %
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top30
Dataset subset: BM5 Enzyme Table1 cohort
59 targets_with_acceptable_or_better_model
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top30

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, second (top30) row; Good models Number
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top30
Dataset subset: BM5 Enzyme Table1 cohort
4 acceptable_or_better_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top30

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, second (top30) row; difficult column; acceptable_or_better_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top30
Dataset subset: BM5 Enzyme Table1 cohort
0 high_accuracy_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top30

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, second (top30) row; difficult column; high_accuracy_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top30
Dataset subset: BM5 Enzyme Table1 cohort
2 medium_accuracy_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top30

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, second (top30) row; difficult column; medium_accuracy_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top30
Dataset subset: BM5 Enzyme Table1 cohort
50 acceptable_or_better_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top30

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, second (top30) row; easy column; acceptable_or_better_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top30
Dataset subset: BM5 Enzyme Table1 cohort
2 high_accuracy_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top30

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, second (top30) row; easy column; high_accuracy_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top30
Dataset subset: BM5 Enzyme Table1 cohort
21 medium_accuracy_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top30

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, second (top30) row; easy column; medium_accuracy_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top30
Dataset subset: BM5 Enzyme Table1 cohort
5 acceptable_or_better_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top30

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, second (top30) row; intermediate column; acceptable_or_better_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top30
Dataset subset: BM5 Enzyme Table1 cohort
0 high_accuracy_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top30

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, second (top30) row; intermediate column; high_accuracy_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top30
Dataset subset: BM5 Enzyme Table1 cohort
2 medium_accuracy_targets
targets · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top30

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, second (top30) row; intermediate column; medium_accuracy_targets
Configuration: ClusPro BM5 Table1 enzyme-balancedProtocol: ClusPro BM5 Enzyme top30
Dataset subset: BM5 Enzyme Table1 cohort
67% success_at_30
percent · higher

Uncertainty: type: unreported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ClusPro Enzyme top30

Not reported

Aggregation: Not reported

Performance and its limits in rigid body protein-protein docking · Table1 Enzyme, second (top30) row; Good models %

Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.

Subset and evaluation context

This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

10 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-30-e37e3ab1284d
Property and statementOriginal source and locationReview and provenance
attributes.difficulty_counts.difficult
14
Context-only references
Performance and its limits in rigid body protein-protein docking

Original source ↗

Table1 Number of targets tested; footnote a

Version: Structure 28(9):1071–1081.e3; 2020; PMC author manuscript NIHMS1608597
Retrieved: 2026-09-30T21:50:23.483497+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.difficulty_counts.difficult

Source artifact SHA-256: 1c02bd7c53eb0e5d5c243b5e6da23168eb20bcc32ab970719666a5838fd58443

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.difficulty_counts.easy
61
Context-only references
Performance and its limits in rigid body protein-protein docking

Original source ↗

Table1 Number of targets tested; footnote a

Version: Structure 28(9):1071–1081.e3; 2020; PMC author manuscript NIHMS1608597
Retrieved: 2026-09-30T21:50:23.483497+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.difficulty_counts.easy

Source artifact SHA-256: 1c02bd7c53eb0e5d5c243b5e6da23168eb20bcc32ab970719666a5838fd58443

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.difficulty_counts.intermediate
13
Context-only references
Performance and its limits in rigid body protein-protein docking

Original source ↗

Table1 Number of targets tested; footnote a

Version: Structure 28(9):1071–1081.e3; 2020; PMC author manuscript NIHMS1608597
Retrieved: 2026-09-30T21:50:23.483497+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.difficulty_counts.intermediate

Source artifact SHA-256: 1c02bd7c53eb0e5d5c243b5e6da23168eb20bcc32ab970719666a5838fd58443

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.eligible_count
88
Context-only references
Performance and its limits in rigid body protein-protein docking

Original source ↗

Table1 Number of targets tested; footnote a

Version: Structure 28(9):1071–1081.e3; 2020; PMC author manuscript NIHMS1608597
Retrieved: 2026-09-30T21:50:23.483497+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.eligible_count

Source artifact SHA-256: 1c02bd7c53eb0e5d5c243b5e6da23168eb20bcc32ab970719666a5838fd58443

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.original_printed_counts
88/61/13/14
Context-only references
Performance and its limits in rigid body protein-protein docking

Original source ↗

Table1 Number of targets tested; footnote a

Version: Structure 28(9):1071–1081.e3; 2020; PMC author manuscript NIHMS1608597
Retrieved: 2026-09-30T21:50:23.483497+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.original_printed_counts

Source artifact SHA-256: 1c02bd7c53eb0e5d5c243b5e6da23168eb20bcc32ab970719666a5838fd58443

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.scored_count
88
Context-only references
Performance and its limits in rigid body protein-protein docking

Original source ↗

Table1 Number of targets tested; footnote a

Version: Structure 28(9):1071–1081.e3; 2020; PMC author manuscript NIHMS1608597
Retrieved: 2026-09-30T21:50:23.483497+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.scored_count

Source artifact SHA-256: 1c02bd7c53eb0e5d5c243b5e6da23168eb20bcc32ab970719666a5838fd58443

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.source_locator
Table1 Number of targets tested; footnote a
Context-only references
Performance and its limits in rigid body protein-protein docking

Original source ↗

Table1 Number of targets tested; footnote a

Version: Structure 28(9):1071–1081.e3; 2020; PMC author manuscript NIHMS1608597
Retrieved: 2026-09-30T21:50:23.483497+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 1c02bd7c53eb0e5d5c243b5e6da23168eb20bcc32ab970719666a5838fd58443

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.version
BM5
Context-only references
Performance and its limits in rigid body protein-protein docking

Original source ↗

Table1 Number of targets tested; footnote a

Version: Structure 28(9):1071–1081.e3; 2020; PMC author manuscript NIHMS1608597
Retrieved: 2026-09-30T21:50:23.483497+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.version

Source artifact SHA-256: 1c02bd7c53eb0e5d5c243b5e6da23168eb20bcc32ab970719666a5838fd58443

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

description
Component structures downloaded from BM5; docking uses balanced coefficients.
Context-only references
Performance and its limits in rigid body protein-protein docking

Original source ↗

Table1 Number of targets tested; footnote a

Version: Structure 28(9):1071–1081.e3; 2020; PMC author manuscript NIHMS1608597
Retrieved: 2026-09-30T21:50:23.483497+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 1c02bd7c53eb0e5d5c243b5e6da23168eb20bcc32ab970719666a5838fd58443

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

name
BM5 Enzyme Table1 cohort
Context-only references
Performance and its limits in rigid body protein-protein docking

Original source ↗

Table1 Number of targets tested; footnote a

Version: Structure 28(9):1071–1081.e3; 2020; PMC author manuscript NIHMS1608597
Retrieved: 2026-09-30T21:50:23.483497+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 1c02bd7c53eb0e5d5c243b5e6da23168eb20bcc32ab970719666a5838fd58443

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-30-e37e3ab1284d · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: ucc-docking-cluspro-bm5-2020-dataset-enzyme

areas
proteins-complexes
version
BM5
source locator
Table1 Number of targets tested; footnote a
scored count
88
eligible count
88
difficulty counts
easy: 61; intermediate: 13; difficult: 14
original printed counts
88/61/13/14
review
method: automated_source_review; reviewed at: 2026-09-30T21:50:23.483497+00:00; date: 2026-09-30; reviewer: Codex primary-source table extraction; note: Source transcription only; not execution, human scientific review or independent reproduction.
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