The split of RAbD, 55 antibody-antigen complexes that ProteinBench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
100 evaluations · 100 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: AbDPO | Task: ProteinBench AB-ACCURACY-AAR: Accuracy AAR Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 31.29% ± 7.29 Sequence recovery (cdr-h3) percent · higher Uncertainty: SD 7.29 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-ACCURACY-AAR: Accuracy AAR Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Accuracy AAR ↑) |
| Configuration: AbDPO | Task: ProteinBench AB-ACCURACY-RMSD: Accuracy RMSD Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 2.79 ± 3.01 RMSD (cdr-h3, ca atoms) unit-unreported · lower Uncertainty: SD 3.01 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-ACCURACY-RMSD: Accuracy RMSD Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Accuracy RMSD ↓) |
| Configuration: AbDPO | Task: ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-score Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 0.35 ± 0.06 TM score (cdr-h3) unitless · higher Uncertainty: SD 0.06 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-score Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Accuracy TM-score ↑) |
| Configuration: AbDPO | Task: ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding Energy Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 116.06 ± 186.06 Proteinbench binding energy unit-unreported · lower Uncertainty: SD 186.06 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding Energy Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Functionality Binding Energy ↓) |
| Configuration: AbDPO | Task: ProteinBench AB-RATIONALITY-CLASHES-INNER: Rationality Clashes-inner Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 4.14 ± 1.84 Proteinbench clashes inner count · lower Uncertainty: SD 1.84 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-RATIONALITY-CLASHES-INNER: Rationality Clashes-inner Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Rationality Clashes-inner ↓) |
| Configuration: AbDPO | Task: ProteinBench AB-RATIONALITY-CLASHES-OUTER: Rationality Clashes-outer Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 0 .10 ± 0.24 Proteinbench clashes outer count · lower Uncertainty: SD 0.24 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-RATIONALITY-CLASHES-OUTER: Rationality Clashes-outer Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Rationality Clashes-outer ↓) |
| Configuration: AbDPO | Task: ProteinBench AB-RATIONALITY-CN-SCORE: Rationality CN-score Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 1.33 ± 2.31 Proteinbench cn score unit-unreported · higher Uncertainty: SD 2.31 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-RATIONALITY-CN-SCORE: Rationality CN-score Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Rationality CN-score ↑) |
| Configuration: AbDPO | Task: ProteinBench AB-RATIONALITY-SCRMSD: Rationality scRMSD Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 2.79 ± 3.25 Scrmsd unit-unreported · lower Uncertainty: SD 3.25 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-RATIONALITY-SCRMSD: Rationality scRMSD Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Rationality scRMSD ↓) |
| Configuration: AbDPO | Task: ProteinBench AB-RATIONALITY-SEQNAT: Rationality SeqNat Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | -1.99 ± 0.34 Proteinbench seqnat unitless · higher Uncertainty: SD 0.34 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-RATIONALITY-SEQNAT: Rationality SeqNat Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Rationality SeqNat ↑) |
| Configuration: AbDPO | Task: ProteinBench AB-RATIONALITY-TOTAL-ENERGY: Rationality Total Energy Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 270.12 ± 217.45 Proteinbench total energy unit-unreported · lower Uncertainty: SD 217.45 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-RATIONALITY-TOTAL-ENERGY: Rationality Total Energy Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Rationality Total Energy ↓) |
| Configuration: AbDPO | Task: ProteinBench AB-SPECIFICITY-PHR: Specificity PHR Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 69.69% ± 8.49 Proteinbench phr percent · lower Uncertainty: SD 8.49 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-SPECIFICITY-PHR: Specificity PHR Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Specificity PHR ↓) |
| Configuration: AbDPO | Task: ProteinBench AB-SPECIFICITY-SEQSIM-INNER: Specificity SeqSim-inner Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 0 .60 Proteinbench seqsim inner unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-SPECIFICITY-SEQSIM-INNER: Specificity SeqSim-inner Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Specificity SeqSim-inner ↑) |
| Configuration: AbDPO | Task: ProteinBench AB-SPECIFICITY-SEQSIM-OUTER: Specificity SeqSim-outer Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 0 .38 Proteinbench seqsim outer unitless · lower Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO on ProteinBench AB-SPECIFICITY-SEQSIM-OUTER: Specificity SeqSim-outer Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO), column(Specificity SeqSim-outer ↓) |
| Configuration: AbDPO++ | Task: ProteinBench AB-ACCURACY-AAR: Accuracy AAR Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 36.25% ± 7.95 Sequence recovery (cdr-h3) percent · higher Uncertainty: SD 7.95 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO++ on ProteinBench AB-ACCURACY-AAR: Accuracy AAR Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Accuracy AAR ↑) |
| Configuration: AbDPO++ | Task: ProteinBench AB-ACCURACY-RMSD: Accuracy RMSD Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 2.48 ± 0.59 RMSD (cdr-h3, ca atoms) unit-unreported · lower Uncertainty: SD 0.59 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO++ on ProteinBench AB-ACCURACY-RMSD: Accuracy RMSD Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Accuracy RMSD ↓) |
| Configuration: AbDPO++ | Task: ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-score Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 0.35 ± 0.06 TM score (cdr-h3) unitless · higher Uncertainty: SD 0.06 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO++ on ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-score Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Accuracy TM-score ↑) |
| Configuration: AbDPO++ | Task: ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding Energy Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 2 23.73 ± 281.7 Proteinbench binding energy unit-unreported · lower Uncertainty: SD 281.7 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO++ on ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding Energy Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Functionality Binding Energy ↓) |
| Configuration: AbDPO++ | Task: ProteinBench AB-RATIONALITY-CLASHES-INNER: Rationality Clashes-inner Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 1.66 ± 1.28 Proteinbench clashes inner count · lower Uncertainty: SD 1.28 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO++ on ProteinBench AB-RATIONALITY-CLASHES-INNER: Rationality Clashes-inner Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Rationality Clashes-inner ↓) |
| Configuration: AbDPO++ | Task: ProteinBench AB-RATIONALITY-CLASHES-OUTER: Rationality Clashes-outer Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 0.08 ± 0.20 Proteinbench clashes outer count · lower Uncertainty: SD 0.20 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO++ on ProteinBench AB-RATIONALITY-CLASHES-OUTER: Rationality Clashes-outer Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Rationality Clashes-outer ↓) |
| Configuration: AbDPO++ | Task: ProteinBench AB-RATIONALITY-CN-SCORE: Rationality CN-score Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 2.34 ± 3.20 Proteinbench cn score unit-unreported · higher Uncertainty: SD 3.20 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO++ on ProteinBench AB-RATIONALITY-CN-SCORE: Rationality CN-score Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Rationality CN-score ↑) |
| Configuration: AbDPO++ | Task: ProteinBench AB-RATIONALITY-SCRMSD: Rationality scRMSD Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 2.50 ± 0.75 Scrmsd unit-unreported · lower Uncertainty: SD 0.75 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO++ on ProteinBench AB-RATIONALITY-SCRMSD: Rationality scRMSD Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Rationality scRMSD ↓) |
| Configuration: AbDPO++ | Task: ProteinBench AB-RATIONALITY-SEQNAT: Rationality SeqNat Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | - 1.78 ± 0.43 Proteinbench seqnat unitless · higher Uncertainty: SD 0.43 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO++ on ProteinBench AB-RATIONALITY-SEQNAT: Rationality SeqNat Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Rationality SeqNat ↑) |
| Configuration: AbDPO++ | Task: ProteinBench AB-RATIONALITY-TOTAL-ENERGY: Rationality Total Energy Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 3 38.14 ± 266.48 Proteinbench total energy unit-unreported · lower Uncertainty: SD 266.48 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO++ on ProteinBench AB-RATIONALITY-TOTAL-ENERGY: Rationality Total Energy Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Rationality Total Energy ↓) |
| Configuration: AbDPO++ | Task: ProteinBench AB-SPECIFICITY-PHR: Specificity PHR Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 44.51% ± 9.55 Proteinbench phr percent · lower Uncertainty: SD 9.55 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO++ on ProteinBench AB-SPECIFICITY-PHR: Specificity PHR Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Specificity PHR ↓) |
| Configuration: AbDPO++ | Task: ProteinBench AB-SPECIFICITY-SEQSIM-INNER: Specificity SeqSim-inner Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 0.54 Proteinbench seqsim inner unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAbDPO++ on ProteinBench AB-SPECIFICITY-SEQSIM-INNER: Specificity SeqSim-inner Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(AbDPO++), column(Specificity SeqSim-inner ↑) |
Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.
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| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Description The split of RAbD, 55 antibody-antigen complexes that ProteinBench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits. Context-only references | proteinbench primary benchmark evidence No field-specific location recorded Version: 2409.06744v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Name RAbD, 55 antibody-antigen complexes (ProteinBench split) Context-only references | proteinbench primary benchmark evidence No field-specific location recorded Version: 2409.06744v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Stable ID: proteinbench-dataset-rabd-55-antibody-antigen-complexes