The split of Generated sequences at fixed lengths that ProteinBench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
92 evaluations · 92 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-100-DIVERSITY-MAX-CLUST: length 100, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.8 Proteinbench max clust fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-100-DIVERSITY-MAX-CLUST: length 100, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Diversity Max Clust. ↑) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-100-DIVERSITY-PAIRWISE-TM: length 100, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.50 ± 0.20 Proteinbench pairwise TM unitless · lower Uncertainty: SD 0.20 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-100-DIVERSITY-PAIRWISE-TM: length 100, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Diversity pairwise TM ↓) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-100-NOVELTY-MAX-TM: length 100, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.74 ± 0.10 Proteinbench max TM unitless · lower Uncertainty: SD 0.10 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-100-NOVELTY-MAX-TM: length 100, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Novelty Max TM ↓) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-100-QUALITY-PLDDT: length 100, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 85.38 ± 14.20 Plddt unitless · higher Uncertainty: SD 14.20 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-100-QUALITY-PLDDT: length 100, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Quality pLDDT ↑) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-100-QUALITY-PPL: length 100, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 6.21 ± 3.10 Perplexity unitless · lower Uncertainty: SD 3.10 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-100-QUALITY-PPL: length 100, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Quality ppl ↓) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-200-DIVERSITY-MAX-CLUST: length 200, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.7 Proteinbench max clust fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-200-DIVERSITY-MAX-CLUST: length 200, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Diversity Max Clust. ↑) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-200-DIVERSITY-PAIRWISE-TM: length 200, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.54 ± 0.24 Proteinbench pairwise TM unitless · lower Uncertainty: SD 0.24 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-200-DIVERSITY-PAIRWISE-TM: length 200, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Diversity pairwise TM ↓) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-200-NOVELTY-MAX-TM: length 200, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.91 ± 0.004 Proteinbench max TM unitless · lower Uncertainty: SD 0.004 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-200-NOVELTY-MAX-TM: length 200, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Novelty Max TM ↓) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-200-QUALITY-PLDDT: length 200, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 93.54 ± 3.73 Plddt unitless · higher Uncertainty: SD 3.73 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-200-QUALITY-PLDDT: length 200, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Quality pLDDT↑) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-200-QUALITY-PPL: length 200, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 4.61 ± 2.63 Perplexity unitless · lower Uncertainty: SD 2.63 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-200-QUALITY-PPL: length 200, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Quality ppl ↓) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-300-DIVERSITY-MAX-CLUST: length 300, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.63 Proteinbench max clust fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-300-DIVERSITY-MAX-CLUST: length 300, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Diversity Max Clust. ↑) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-300-DIVERSITY-PAIRWISE-TM: length 300, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.57 ± 0.25 Proteinbench pairwise TM unitless · lower Uncertainty: SD 0.25 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-300-DIVERSITY-PAIRWISE-TM: length 300, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Diversity pairwise TM ↓) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-300-NOVELTY-MAX-TM: length 300, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.91 ± 0.01 Proteinbench max TM unitless · lower Uncertainty: SD 0.01 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-300-NOVELTY-MAX-TM: length 300, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Novelty Max TM ↓) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-300-QUALITY-PLDDT: length 300, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 93.07 ± 5.77 Plddt unitless · higher Uncertainty: SD 5.77 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-300-QUALITY-PLDDT: length 300, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Quality pLDDT ↑) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-300-QUALITY-PPL: length 300, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 3.47 ± 1.44 Perplexity unitless · lower Uncertainty: SD 1.44 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-300-QUALITY-PPL: length 300, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Quality ppl ↓) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-500-DIVERSITY-MAX-CLUST: length 500, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.85 Proteinbench max clust fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-500-DIVERSITY-MAX-CLUST: length 500, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Diversity Max Clust. ↑) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-500-DIVERSITY-PAIRWISE-TM: length 500, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.43 ± 0.18 Proteinbench pairwise TM unitless · lower Uncertainty: SD 0.18 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-500-DIVERSITY-PAIRWISE-TM: length 500, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Diversity pairwise TM ↓) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-500-NOVELTY-MAX-TM: length 500, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.85 ± 0.04 Proteinbench max TM unitless · lower Uncertainty: SD 0.04 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-500-NOVELTY-MAX-TM: length 500, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Novelty Max TM ↓) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-500-QUALITY-PLDDT: length 500, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 87.73 ± 11.61 Plddt unitless · higher Uncertainty: SD 11.61 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-500-QUALITY-PLDDT: length 500, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Quality pLDDT↑) |
| Configuration: DPLM (650M) | Task: ProteinBench SEQ-LENGTH-500-QUALITY-PPL: length 500, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 3.33 ± 1.8 Perplexity unitless · lower Uncertainty: SD 1.8 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDPLM (650M) on ProteinBench SEQ-LENGTH-500-QUALITY-PPL: length 500, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Quality ppl ↓) |
| Configuration: ESM3 (1.4B) | Task: ProteinBench SEQ-LENGTH-100-DIVERSITY-MAX-CLUST: length 100, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.9 Proteinbench max clust fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM3 (1.4B) on ProteinBench SEQ-LENGTH-100-DIVERSITY-MAX-CLUST: length 100, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(ESM3 (1.4B)), column(length 100, Diversity Max Clust. ↑) |
| Configuration: ESM3 (1.4B) | Task: ProteinBench SEQ-LENGTH-100-DIVERSITY-PAIRWISE-TM: length 100, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.45 ± 0.15 Proteinbench pairwise TM unitless · lower Uncertainty: SD 0.15 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM3 (1.4B) on ProteinBench SEQ-LENGTH-100-DIVERSITY-PAIRWISE-TM: length 100, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(ESM3 (1.4B)), column(length 100, Diversity pairwise TM ↓) |
| Configuration: ESM3 (1.4B) | Task: ProteinBench SEQ-LENGTH-100-NOVELTY-MAX-TM: length 100, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 0.68 ± 0.07 Proteinbench max TM unitless · lower Uncertainty: SD 0.07 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM3 (1.4B) on ProteinBench SEQ-LENGTH-100-NOVELTY-MAX-TM: length 100, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(ESM3 (1.4B)), column(length 100, Novelty Max TM ↓) |
| Configuration: ESM3 (1.4B) | Task: ProteinBench SEQ-LENGTH-100-QUALITY-PLDDT: length 100, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 54.26 ± 15.35 Plddt unitless · higher Uncertainty: SD 15.35 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM3 (1.4B) on ProteinBench SEQ-LENGTH-100-QUALITY-PLDDT: length 100, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(ESM3 (1.4B)), column(length 100, Quality pLDDT ↑) |
| Configuration: ESM3 (1.4B) | Task: ProteinBench SEQ-LENGTH-100-QUALITY-PPL: length 100, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split) | 14.79 ± 2.90 Perplexity unitless · lower Uncertainty: SD 2.90 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM3 (1.4B) on ProteinBench SEQ-LENGTH-100-QUALITY-PPL: length 100, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(ESM3 (1.4B)), column(length 100, Quality ppl ↓) |
Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.
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2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Description The split of Generated sequences at fixed lengths that ProteinBench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits. Context-only references | proteinbench primary benchmark evidence No field-specific location recorded Version: 2409.06744v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Name Generated sequences at fixed lengths (ProteinBench split) Context-only references | proteinbench primary benchmark evidence No field-specific location recorded Version: 2409.06744v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Stable ID: proteinbench-dataset-generated-sequences-at-fixed-lengths