Configuration

DPLM (650M)

Protein model evaluated by the ProteinBench authors under their harness.

Overview

Protein model evaluated by the ProteinBench authors under their harness.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

20 evaluations · 20 results. Different protocols are not a single leaderboard.

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-100-DIVERSITY-MAX-CLUST: length 100, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.8 max-clust score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-100-DIVERSITY-MAX-CLUST: length 100, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Diversity Max Clust. ↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-100-DIVERSITY-PAIRWISE-TM: length 100, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.50 ± 0.20 pairwise-tm score · lower Uncertainty: type: standard_deviation; value: 0.20 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-100-DIVERSITY-PAIRWISE-TM: length 100, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Diversity pairwise TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-100-NOVELTY-MAX-TM: length 100, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.74 ± 0.10 max-tm score · lower Uncertainty: type: standard_deviation; value: 0.10 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-100-NOVELTY-MAX-TM: length 100, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Novelty Max TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-100-QUALITY-PLDDT: length 100, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	85.38 ± 14.20 plddt score · higher Uncertainty: type: standard_deviation; value: 14.20 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-100-QUALITY-PLDDT: length 100, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Quality pLDDT ↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-100-QUALITY-PPL: length 100, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	6.21 ± 3.10 ppl score · lower Uncertainty: type: standard_deviation; value: 3.10 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-100-QUALITY-PPL: length 100, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Quality ppl ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-200-DIVERSITY-MAX-CLUST: length 200, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.7 max-clust score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-200-DIVERSITY-MAX-CLUST: length 200, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Diversity Max Clust. ↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-200-DIVERSITY-PAIRWISE-TM: length 200, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.54 ± 0.24 pairwise-tm score · lower Uncertainty: type: standard_deviation; value: 0.24 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-200-DIVERSITY-PAIRWISE-TM: length 200, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Diversity pairwise TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-200-NOVELTY-MAX-TM: length 200, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.91 ± 0.004 max-tm score · lower Uncertainty: type: standard_deviation; value: 0.004 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-200-NOVELTY-MAX-TM: length 200, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Novelty Max TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-200-QUALITY-PLDDT: length 200, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	93.54 ± 3.73 plddt score · higher Uncertainty: type: standard_deviation; value: 3.73 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-200-QUALITY-PLDDT: length 200, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Quality pLDDT↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-200-QUALITY-PPL: length 200, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	4.61 ± 2.63 ppl score · lower Uncertainty: type: standard_deviation; value: 2.63 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-200-QUALITY-PPL: length 200, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Quality ppl ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-300-DIVERSITY-MAX-CLUST: length 300, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.63 max-clust score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-300-DIVERSITY-MAX-CLUST: length 300, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Diversity Max Clust. ↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-300-DIVERSITY-PAIRWISE-TM: length 300, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.57 ± 0.25 pairwise-tm score · lower Uncertainty: type: standard_deviation; value: 0.25 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-300-DIVERSITY-PAIRWISE-TM: length 300, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Diversity pairwise TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-300-NOVELTY-MAX-TM: length 300, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.91 ± 0.01 max-tm score · lower Uncertainty: type: standard_deviation; value: 0.01 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-300-NOVELTY-MAX-TM: length 300, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Novelty Max TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-300-QUALITY-PLDDT: length 300, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	93.07 ± 5.77 plddt score · higher Uncertainty: type: standard_deviation; value: 5.77 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-300-QUALITY-PLDDT: length 300, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Quality pLDDT ↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-300-QUALITY-PPL: length 300, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	3.47 ± 1.44 ppl score · lower Uncertainty: type: standard_deviation; value: 1.44 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-300-QUALITY-PPL: length 300, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Quality ppl ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-500-DIVERSITY-MAX-CLUST: length 500, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.85 max-clust score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-500-DIVERSITY-MAX-CLUST: length 500, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Diversity Max Clust. ↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-500-DIVERSITY-PAIRWISE-TM: length 500, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.43 ± 0.18 pairwise-tm score · lower Uncertainty: type: standard_deviation; value: 0.18 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-500-DIVERSITY-PAIRWISE-TM: length 500, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Diversity pairwise TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-500-NOVELTY-MAX-TM: length 500, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.85 ± 0.04 max-tm score · lower Uncertainty: type: standard_deviation; value: 0.04 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-500-NOVELTY-MAX-TM: length 500, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Novelty Max TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-500-QUALITY-PLDDT: length 500, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	87.73 ± 11.61 plddt score · higher Uncertainty: type: standard_deviation; value: 11.61 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-500-QUALITY-PLDDT: length 500, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Quality pLDDT↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-500-QUALITY-PPL: length 500, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	3.33 ± 1.8 ppl score · lower Uncertainty: type: standard_deviation; value: 1.8 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-500-QUALITY-PPL: length 500, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Quality ppl ↓)

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