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DPLM (650M)

DPLM (650M), scored on ProteinBench; its model version and settings are not identified.

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

20 evaluations · 20 results. Different protocols are not a single leaderboard.

Dataset subset: Generated sequences at fixed lengths (ProteinBench split)

Sorted by Perplexity (lower is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Protocol and dataset	Perplexity	Plddt	Proteinbench max clust	Proteinbench max TM	Proteinbench pairwise TM
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-500-QUALITY-PPL: length 500, Quality ppl	3.33 ± 1.8 (best in column)	Not reported	Not reported	Not reported	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-300-QUALITY-PPL: length 300, Quality ppl	3.47 ± 1.44	Not reported	Not reported	Not reported	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-200-QUALITY-PPL: length 200, Quality ppl	4.61 ± 2.63	Not reported	Not reported	Not reported	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-100-QUALITY-PPL: length 100, Quality ppl	6.21 ± 3.10	Not reported	Not reported	Not reported	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-100-DIVERSITY-MAX-CLUST: length 100, Diversity Max Clust.	Not reported	Not reported	0.8	Not reported	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-100-DIVERSITY-PAIRWISE-TM: length 100, Diversity pairwise TM	Not reported	Not reported	Not reported	Not reported	0.50 ± 0.20
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-100-NOVELTY-MAX-TM: length 100, Novelty Max TM	Not reported	Not reported	Not reported	0.74 ± 0.10 (best in column)	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-100-QUALITY-PLDDT: length 100, Quality pLDDT	Not reported	85.38 ± 14.20	Not reported	Not reported	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-200-DIVERSITY-MAX-CLUST: length 200, Diversity Max Clust.	Not reported	Not reported	0.7	Not reported	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-200-DIVERSITY-PAIRWISE-TM: length 200, Diversity pairwise TM	Not reported	Not reported	Not reported	Not reported	0.54 ± 0.24
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-200-NOVELTY-MAX-TM: length 200, Novelty Max TM	Not reported	Not reported	Not reported	0.91 ± 0.004	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-200-QUALITY-PLDDT: length 200, Quality pLDDT	Not reported	93.54 ± 3.73 (best in column)	Not reported	Not reported	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-300-DIVERSITY-MAX-CLUST: length 300, Diversity Max Clust.	Not reported	Not reported	0.63	Not reported	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-300-DIVERSITY-PAIRWISE-TM: length 300, Diversity pairwise TM	Not reported	Not reported	Not reported	Not reported	0.57 ± 0.25
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-300-NOVELTY-MAX-TM: length 300, Novelty Max TM	Not reported	Not reported	Not reported	0.91 ± 0.01	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-300-QUALITY-PLDDT: length 300, Quality pLDDT	Not reported	93.07 ± 5.77	Not reported	Not reported	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-500-DIVERSITY-MAX-CLUST: length 500, Diversity Max Clust.	Not reported	Not reported	0.85 (best in column)	Not reported	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-500-DIVERSITY-PAIRWISE-TM: length 500, Diversity pairwise TM	Not reported	Not reported	Not reported	Not reported	0.43 ± 0.18 (best in column)
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-500-NOVELTY-MAX-TM: length 500, Novelty Max TM	Not reported	Not reported	Not reported	0.85 ± 0.04	Not reported
DPLM (650M)Evaluation	ProteinBench SEQ-LENGTH-500-QUALITY-PLDDT: length 500, Quality pLDDT	Not reported	87.73 ± 11.61	Not reported	Not reported	Not reported

All 20 result rows with coverage, uncertainty and sources

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-100-DIVERSITY-MAX-CLUST: length 100, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.8 Proteinbench max clust fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-100-DIVERSITY-MAX-CLUST: length 100, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Diversity Max Clust. ↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-100-DIVERSITY-PAIRWISE-TM: length 100, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.50 ± 0.20 Proteinbench pairwise TM unitless · lower Uncertainty: SD 0.20 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-100-DIVERSITY-PAIRWISE-TM: length 100, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Diversity pairwise TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-100-NOVELTY-MAX-TM: length 100, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.74 ± 0.10 Proteinbench max TM unitless · lower Uncertainty: SD 0.10 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-100-NOVELTY-MAX-TM: length 100, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Novelty Max TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-100-QUALITY-PLDDT: length 100, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	85.38 ± 14.20 Plddt unitless · higher Uncertainty: SD 14.20 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-100-QUALITY-PLDDT: length 100, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Quality pLDDT ↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-100-QUALITY-PPL: length 100, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	6.21 ± 3.10 Perplexity unitless · lower Uncertainty: SD 3.10 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-100-QUALITY-PPL: length 100, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 100, Quality ppl ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-200-DIVERSITY-MAX-CLUST: length 200, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.7 Proteinbench max clust fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-200-DIVERSITY-MAX-CLUST: length 200, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Diversity Max Clust. ↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-200-DIVERSITY-PAIRWISE-TM: length 200, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.54 ± 0.24 Proteinbench pairwise TM unitless · lower Uncertainty: SD 0.24 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-200-DIVERSITY-PAIRWISE-TM: length 200, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Diversity pairwise TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-200-NOVELTY-MAX-TM: length 200, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.91 ± 0.004 Proteinbench max TM unitless · lower Uncertainty: SD 0.004 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-200-NOVELTY-MAX-TM: length 200, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Novelty Max TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-200-QUALITY-PLDDT: length 200, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	93.54 ± 3.73 Plddt unitless · higher Uncertainty: SD 3.73 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-200-QUALITY-PLDDT: length 200, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Quality pLDDT↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-200-QUALITY-PPL: length 200, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	4.61 ± 2.63 Perplexity unitless · lower Uncertainty: SD 2.63 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-200-QUALITY-PPL: length 200, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 200, Quality ppl ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-300-DIVERSITY-MAX-CLUST: length 300, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.63 Proteinbench max clust fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-300-DIVERSITY-MAX-CLUST: length 300, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Diversity Max Clust. ↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-300-DIVERSITY-PAIRWISE-TM: length 300, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.57 ± 0.25 Proteinbench pairwise TM unitless · lower Uncertainty: SD 0.25 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-300-DIVERSITY-PAIRWISE-TM: length 300, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Diversity pairwise TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-300-NOVELTY-MAX-TM: length 300, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.91 ± 0.01 Proteinbench max TM unitless · lower Uncertainty: SD 0.01 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-300-NOVELTY-MAX-TM: length 300, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Novelty Max TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-300-QUALITY-PLDDT: length 300, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	93.07 ± 5.77 Plddt unitless · higher Uncertainty: SD 5.77 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-300-QUALITY-PLDDT: length 300, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Quality pLDDT ↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-300-QUALITY-PPL: length 300, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	3.47 ± 1.44 Perplexity unitless · lower Uncertainty: SD 1.44 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-300-QUALITY-PPL: length 300, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 300, Quality ppl ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-500-DIVERSITY-MAX-CLUST: length 500, Diversity Max Clust. Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.85 Proteinbench max clust fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-500-DIVERSITY-MAX-CLUST: length 500, Diversity Max Clust. Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Diversity Max Clust. ↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-500-DIVERSITY-PAIRWISE-TM: length 500, Diversity pairwise TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.43 ± 0.18 Proteinbench pairwise TM unitless · lower Uncertainty: SD 0.18 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-500-DIVERSITY-PAIRWISE-TM: length 500, Diversity pairwise TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Diversity pairwise TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-500-NOVELTY-MAX-TM: length 500, Novelty Max TM Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	0.85 ± 0.04 Proteinbench max TM unitless · lower Uncertainty: SD 0.04 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-500-NOVELTY-MAX-TM: length 500, Novelty Max TM Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Novelty Max TM ↓)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-500-QUALITY-PLDDT: length 500, Quality pLDDT Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	87.73 ± 11.61 Plddt unitless · higher Uncertainty: SD 11.61 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-500-QUALITY-PLDDT: length 500, Quality pLDDT Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Quality pLDDT↑)
Configuration: DPLM (650M)	Task: ProteinBench SEQ-LENGTH-500-QUALITY-PPL: length 500, Quality ppl Dataset subset: Generated sequences at fixed lengths (ProteinBench split)	3.33 ± 1.8 Perplexity unitless · lower Uncertainty: SD 1.8 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source DPLM (650M) on ProteinBench SEQ-LENGTH-500-QUALITY-PPL: length 500, Quality ppl Unconditional sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Aggregation: Not reported proteinbench primary benchmark evidence · Table 4, row(DPLM (650M)), column(length 500, Quality ppl ↓)

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proteinbench primary benchmark evidence · Original source · 2409.06744v1

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Stable ID: proteinbench-method-dplm-650m

areas: proteins-complexes
source locator: Table 4, row(DPLM (650M))
missing metadata: checkpoint revision: reason: unreported; parameters: reason: unextracted
provenance note: Protein model evaluated by the ProteinBench authors under their harness.

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