The split of mRNABench MRL that mRNABench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
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71 evaluations · 71 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: 3UTRBERT | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.19 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source3UTRBERT on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(3UTRBERT), column(MRL) |
| Configuration: AIDO.RNA | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.38 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAIDO.RNA on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(AIDO.RNA), column(MRL) |
| Configuration: DNABERT-S | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.29 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDNABERT-S on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT-S), column(MRL) |
| Configuration: DNABERT2 | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.29 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDNABERT2 on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT2), column(MRL) |
| Configuration: ERNIE-RNA | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.33 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceERNIE-RNA on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(ERNIE-RNA), column(MRL) |
| Configuration: Evo1 | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.19 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEvo1 on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo1), column(MRL) |
| Configuration: Evo2 | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.45 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEvo2 on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo2), column(MRL) |
| Configuration: Helix-mRNA | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.24 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceHelix-mRNA on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Helix-mRNA), column(MRL) |
| Configuration: HyenaDNA | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.28 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceHyenaDNA on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(HyenaDNA), column(MRL) |
| Method: Naive Baseline | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.14 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNaive Baseline on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Baseline), column(MRL) |
| Method: Naive Mamba | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.19 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNaive Mamba on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Mamba), column(MRL) |
| Configuration: NT | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.34 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNT on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(NT), column(MRL) |
| Configuration: Orthrus | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.43 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceOrthrus on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Orthrus), column(MRL) |
| Configuration: RiNALMo | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.42 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRiNALMo on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RiNALMo), column(MRL) |
| Configuration: RNA-FM | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.29 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRNA-FM on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-FM), column(MRL) |
| Configuration: RNA-MSM | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.16 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRNA-MSM on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-MSM), column(MRL) |
| Configuration: RNABERT | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.06 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRNABERT on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNABERT), column(MRL) |
| Configuration: RNAErnie | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.14 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRNAErnie on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNAErnie), column(MRL) |
| Configuration: SpliceBERT | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.34 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSpliceBERT on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(SpliceBERT), column(MRL) |
| Method: Supervised CNN | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.45 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSupervised CNN on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Supervised CNN), column(MRL) |
| Configuration: UTR-LM | Task: mRNABench MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.25 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceUTR-LM on mRNABench MRL: Mean ribosome load A linear probe over frozen embeddings, scored as the mean over ten random seeds. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(UTR-LM), column(MRL) |
| Pipeline: aido-rna-1b600m-cds | Protocol: mRNABench variant probes MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.378 ± 0.011 pearson_r correlation · higher Uncertainty: type: confidence_interval; confidence level: 0.95; reported half width: 0.011; aggregation: mean over ten random splits (table caption wording) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceaido-rna-1b600m-cds on mRNABench variant probes MRL: Mean ribosome load Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 5 (XML T2), data row 2, XML tr 4, column 5 (MRL | Pearson R), model aido-rna-1b600m-cds |
| Pipeline: aido-rna-1b600m | Protocol: mRNABench variant probes MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.360 ± 0.014 pearson_r correlation · higher Uncertainty: type: confidence_interval; confidence level: 0.95; reported half width: 0.014; aggregation: mean over ten random splits (table caption wording) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceaido-rna-1b600m on mRNABench variant probes MRL: Mean ribosome load Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 5 (XML T2), data row 1, XML tr 3, column 5 (MRL | Pearson R), model aido-rna-1b600m |
| Pipeline: aido-rna-650m-cds | Protocol: mRNABench variant probes MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.359 ± 0.015 pearson_r correlation · higher Uncertainty: type: confidence_interval; confidence level: 0.95; reported half width: 0.015; aggregation: mean over ten random splits (table caption wording) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceaido-rna-650m-cds on mRNABench variant probes MRL: Mean ribosome load Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 5 (XML T2), data row 4, XML tr 6, column 5 (MRL | Pearson R), model aido-rna-650m-cds |
| Pipeline: aido-rna-650m | Protocol: mRNABench variant probes MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.353 ± 0.013 pearson_r correlation · higher Uncertainty: type: confidence_interval; confidence level: 0.95; reported half width: 0.013; aggregation: mean over ten random splits (table caption wording) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceaido-rna-650m on mRNABench variant probes MRL: Mean ribosome load Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 5 (XML T2), data row 3, XML tr 5, column 5 (MRL | Pearson R), model aido-rna-650m |
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| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| description The split of mRNABench MRL that mRNABench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits. Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction No field-specific location recorded Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name mRNABench MRL (mRNABench split) Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction No field-specific location recorded Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Stable ID: mrnabench-dataset-mrnabench-mrl