rewire.itbenchmarks
Dataset subset

GUE Core promoter detection, all (GUE split)

The split of GUE Core promoter detection, all that GUE evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

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  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

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  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

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  • artifact hashes: verification is missing
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Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
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  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

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No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

10 evaluations · 10 results. Different protocols are not a single leaderboard.

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Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: DNABERT-2Task: GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all
Dataset subset: GUE Core promoter detection, all (GUE split)
69.4% mcc
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

DNABERT-2 on GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all

Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Aggregation: Not reported

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT-2), column(Core promoter detection all)
Configuration: DNABERT-2 (further pre-trained on GUE)Task: GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all
Dataset subset: GUE Core promoter detection, all (GUE split)
67.5% mcc
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

DNABERT-2 (further pre-trained on GUE) on GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all

Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Aggregation: Not reported

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT-2♦), column(Core promoter detection all)
Configuration: DNABERT (3-mer)Task: GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all
Dataset subset: GUE Core promoter detection, all (GUE split)
70.9% mcc
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

DNABERT (3-mer) on GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all

Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Aggregation: Not reported

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT (3-mer)), column(Core promoter detection all)
Configuration: DNABERT (4-mer)Task: GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all
Dataset subset: GUE Core promoter detection, all (GUE split)
69% mcc
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

DNABERT (4-mer) on GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all

Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Aggregation: Not reported

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT (4-mer)), column(Core promoter detection all)
Configuration: DNABERT (5-mer)Task: GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all
Dataset subset: GUE Core promoter detection, all (GUE split)
69.5% mcc
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

DNABERT (5-mer) on GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all

Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Aggregation: Not reported

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT (5-mer)), column(Core promoter detection all)
Configuration: DNABERT (6-mer)Task: GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all
Dataset subset: GUE Core promoter detection, all (GUE split)
68.9% mcc
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

DNABERT (6-mer) on GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all

Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Aggregation: Not reported

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(DNABERT (6-mer)), column(Core promoter detection all)
Configuration: NT-2500M-1000gTask: GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all
Dataset subset: GUE Core promoter detection, all (GUE split)
67.4% mcc
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NT-2500M-1000g on GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all

Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Aggregation: Not reported

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(NT-2500M-1000g), column(Core promoter detection all)
Configuration: NT-2500M-multiTask: GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all
Dataset subset: GUE Core promoter detection, all (GUE split)
70.3% mcc
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NT-2500M-multi on GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all

Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Aggregation: Not reported

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(NT-2500M-multi), column(Core promoter detection all)
Configuration: NT-500M-1000gTask: GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all
Dataset subset: GUE Core promoter detection, all (GUE split)
66.7% mcc
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NT-500M-1000g on GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all

Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Aggregation: Not reported

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(NT-500M-1000g), column(Core promoter detection all)
Configuration: NT-500M-humanTask: GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all
Dataset subset: GUE Core promoter detection, all (GUE split)
63.5% mcc
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

NT-500M-human on GUE CORE-PROMOTER-DETECTION-ALL: Core promoter detection, dataset all

Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Aggregation: Not reported

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 6, row(NT-500M-human), column(Core promoter detection all)

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Subset and evaluation context

This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.

Evidence

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Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
description
The split of GUE Core promoter detection, all that GUE evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
Context-only references
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes

Original source ↗

No field-specific location recorded

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183387+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

name
GUE Core promoter detection, all (GUE split)
Context-only references
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes

Original source ↗

No field-specific location recorded

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183387+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: gue-dataset-gue-core-promoter-detection-all

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