rewire.itbenchmarks
Dataset subset

MultiRM (BEACON split)

The split of MultiRM that the BEACON authors evaluated on, named in their Table 1. The upstream dataset release is not catalogued here, so no claim is made that this matches the original splits.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • recipe pinned: verification is missing
  • resource estimate: verification is missing

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

17 evaluations · 17 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: BEACON-BTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
94.74(0.20)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 0.20

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

BEACON-B on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B),column(Modif)
Configuration: BEACON-B512Task: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
94.92(0.07)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 0.07

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

BEACON-B512 on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B512),column(Modif)
Method: CNNTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
70.87(0.40)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 0.40

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CNN on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(CNN),column(Modif)
Method: LSTMTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
94.83(0.31)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 0.31

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

LSTM on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(LSTM),column(Modif)
Method: ResNetTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
71.03(0.32)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 0.32

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ResNet on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(ResNet),column(Modif)
Configuration: RNA-FMTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
94.98(0.042)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 0.042

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

RNA-FM on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-FM),column(Modif)
Configuration: RNA-MSMTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
94.89(0.14)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 0.14

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

RNA-MSM on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-MSM),column(Modif)
Configuration: RNABERTTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
82.82(19.09)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 19.09

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

RNABERT on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNABERT),column(Modif)
Configuration: Splice-H510Task: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
62.57(1.92)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 1.92

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Splice-H510 on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-H510),column(Modif)
Configuration: Splice-MS1024Task: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
53.45(6.25)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 6.25

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Splice-MS1024 on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS1024),column(Modif)
Configuration: Splice-MS510Task: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
55.87(5.25)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 5.25

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Splice-MS510 on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS510),column(Modif)
Configuration: UTR-LM-MRLTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
56.41(2.90)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 2.90

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

UTR-LM-MRL on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-MRL),column(Modif)
Configuration: UTR-LM-TE&ELTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
59.70(10.52)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 10.52

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

UTR-LM-TE&EL on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-TE&EL),column(Modif)
Configuration: UTRBERT-3merTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
95.14(0.11)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 0.11

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

UTRBERT-3mer on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-3mer),column(Modif)
Configuration: UTRBERT-4merTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
95.10(0.12)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 0.12

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

UTRBERT-4mer on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-4mer),column(Modif)
Configuration: UTRBERT-5merTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
94.78(0.07)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 0.07

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

UTRBERT-5mer on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-5mer),column(Modif)
Configuration: UTRBERT-6merTask: BEACON Modif: RNA modification site prediction
Dataset subset: MultiRM (BEACON split)
95.08(0.17)% auc
percent · higher

Uncertainty: type: standard_deviation; value: 0.17

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

UTRBERT-6mer on BEACON Modif: RNA modification site prediction

BEACON harness, fixed downstream head per task. Train/validation/test 304,661/3,599/1,200; dataset MultiRM.

Aggregation: Not reported

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-6mer),column(Modif)

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Subset and evaluation context

This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

3 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.source_locator
Table1,p.6,column(Source/Venue)
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table1,p.6,column(Source/Venue)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

description
The split of MultiRM that the BEACON authors evaluated on, named in their Table 1. The upstream dataset release is not catalogued here, so no claim is made that this matches the original splits.
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table1,p.6,column(Source/Venue)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

name
MultiRM (BEACON split)
Context-only references
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table1,p.6,column(Source/Venue)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: beacon-dataset-multirm

areas
rna-transcriptomes
source locator
Table1,p.6,column(Source/Venue)
missing metadata
version: unreported; url: unextracted
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