The split of APARENT that the BEACON authors evaluated on, named in their Table 1. The upstream dataset release is not catalogued here, so no claim is made that this matches the original splits.
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17 evaluations · 17 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: BEACON-B | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 70.59(0.91)% r2 percent · higher Uncertainty: type: standard_deviation; value: 0.91 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceBEACON-B on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B),column(APA) |
| Configuration: BEACON-B512 | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 72.00(0.17)% r2 percent · higher Uncertainty: type: standard_deviation; value: 0.17 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceBEACON-B512 on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(BEACON-B512),column(APA) |
| Method: CNN | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 50.93(0.17)% r2 percent · higher Uncertainty: type: standard_deviation; value: 0.17 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCNN on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(CNN),column(APA) |
| Method: LSTM | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 67.03(0.86)% r2 percent · higher Uncertainty: type: standard_deviation; value: 0.86 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceLSTM on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(LSTM),column(APA) |
| Method: ResNet | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 56.45(0.94)% r2 percent · higher Uncertainty: type: standard_deviation; value: 0.94 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceResNet on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(ResNet),column(APA) |
| Configuration: RNA-FM | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 70.32(0.97)% r2 percent · higher Uncertainty: type: standard_deviation; value: 0.97 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRNA-FM on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-FM),column(APA) |
| Configuration: RNA-MSM | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 70.40(1.12)% r2 percent · higher Uncertainty: type: standard_deviation; value: 1.12 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRNA-MSM on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNA-MSM),column(APA) |
| Configuration: RNABERT | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 57.66(2.11)% r2 percent · higher Uncertainty: type: standard_deviation; value: 2.11 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRNABERT on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(RNABERT),column(APA) |
| Configuration: Splice-H510 | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 58.65(2.34)% r2 percent · higher Uncertainty: type: standard_deviation; value: 2.34 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSplice-H510 on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-H510),column(APA) |
| Configuration: Splice-MS1024 | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 60.03(3.42)% r2 percent · higher Uncertainty: type: standard_deviation; value: 3.42 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSplice-MS1024 on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS1024),column(APA) |
| Configuration: Splice-MS510 | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 52.46(17.36)% r2 percent · higher Uncertainty: type: standard_deviation; value: 17.36 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSplice-MS510 on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(Splice-MS510),column(APA) |
| Configuration: UTR-LM-MRL | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 64.99(4.90)% r2 percent · higher Uncertainty: type: standard_deviation; value: 4.90 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceUTR-LM-MRL on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-MRL),column(APA) |
| Configuration: UTR-LM-TE&EL | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 72.09(0.82)% r2 percent · higher Uncertainty: type: standard_deviation; value: 0.82 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceUTR-LM-TE&EL on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTR-LM-TE&EL),column(APA) |
| Configuration: UTRBERT-3mer | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 69.52(4.56)% r2 percent · higher Uncertainty: type: standard_deviation; value: 4.56 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceUTRBERT-3mer on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-3mer),column(APA) |
| Configuration: UTRBERT-4mer | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 72.71(0.85)% r2 percent · higher Uncertainty: type: standard_deviation; value: 0.85 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceUTRBERT-4mer on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-4mer),column(APA) |
| Configuration: UTRBERT-5mer | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 72.70(1.77)% r2 percent · higher Uncertainty: type: standard_deviation; value: 1.77 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceUTRBERT-5mer on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-5mer),column(APA) |
| Configuration: UTRBERT-6mer | Task: BEACON APA: Alternative polyadenylation isoform prediction Dataset subset: APARENT (BEACON split) | 71.17(2.30)% r2 percent · higher Uncertainty: type: standard_deviation; value: 2.30 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceUTRBERT-6mer on BEACON APA: Alternative polyadenylation isoform prediction BEACON harness, fixed downstream head per task. Train/validation/test 145,463/33,170/49,755; dataset APARENT. Aggregation: Not reported BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-6mer),column(APA) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
3 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.source_locator Table1,p.6,column(Source/Venue) Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,column(Source/Venue) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description The split of APARENT that the BEACON authors evaluated on, named in their Table 1. The upstream dataset release is not catalogued here, so no claim is made that this matches the original splits. Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,column(Source/Venue) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name APARENT (BEACON split) Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,column(Source/Venue) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: beacon-dataset-aparent