Dataset subset

HSC

Source-defined subset: HSC. Exact membership and scoring coverage remain as reported in the cited artifact.

Evaluation results

12 evaluations · 48 results. Different protocols are not a single leaderboard.

Filter evaluations

Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: GRISLI	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	0.785 Early precision ratio (activating edges only) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source GRISLI · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 8, column 12
Configuration: GRNVBEM	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	1.33 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source GRNVBEM · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 13, column 8
Configuration: GRNBOOST2	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	2.2 Early precision ratio (inhibitory edges only) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source GRNBOOST2 · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 5, column 16
Configuration: GRISLI	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	0.94 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source GRISLI · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 8, column 8
Configuration: LEAP	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	0.72 Early precision ratio (activating edges only) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LEAP · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 11, column 12
Configuration: PPCOR	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	1.73 AUPRC ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PPCOR · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 6, column 4
Configuration: SINCERITIES	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	1.08 AUPRC ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source SINCERITIES · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 12, column 4
Configuration: PPCOR	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	1.76 Early precision ratio (inhibitory edges only) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PPCOR · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 6, column 16
Configuration: SCODE	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	1.85 AUPRC ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source SCODE · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 7, column 4
Configuration: SCODE	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	2.36 Early precision ratio (activating edges only) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source SCODE · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 7, column 12
Configuration: SCRIBE	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	1.05 AUPRC ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source SCRIBE · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 14, column 4
Configuration: PPCOR	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	1.63 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PPCOR · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 6, column 8
Configuration: SCNS	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	1.59 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source SCNS · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 10, column 8
Configuration: LEAP	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	0.88 Early precision ratio (inhibitory edges only) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LEAP · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 11, column 16
Configuration: GRISLI	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	0.958 AUPRC ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source GRISLI · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 8, column 4
Configuration: SCNS	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	2.07 Early precision ratio (inhibitory edges only) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source SCNS · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 10, column 16
Configuration: PIDC	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	2.88 Early precision ratio (activating edges only) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 3, column 12
Configuration: GRNVBEM	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	2.55 Early precision ratio (activating edges only) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source GRNVBEM · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 13, column 12
Configuration: SCODE	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	1.79 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source SCODE · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 7, column 8
Configuration: GENIE3	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	1.99 AUPRC ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source GENIE3 · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 4, column 4
Configuration: LEAP	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	1.28 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source LEAP · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 11, column 8
Configuration: SCODE	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	2.42 Early precision ratio (inhibitory edges only) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source SCODE · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 7, column 16
Configuration: GENIE3	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	2.64 Early precision ratio (inhibitory edges only) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source GENIE3 · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 4, column 16
Configuration: PIDC	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	2.12 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 3, column 8
Configuration: PIDC	Protocol: BEELINE 2020 Figure 4 · HSC Dataset subset: HSC	1.97 AUPRC ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 4 · HSC BEELINE 2020 Figure 4 Aggregation: Median across source-described simulation datasets BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 4 source CSV row 3, column 4

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-11-02-a7f03c9e55a5 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
Metrics are recomputed from the saved predictions: not yet verified
Sample annotations are recorded: not yet verified
Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
A pinned run recipe exists: not yet verified
Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
Independent validation data exist: not yet verified
Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Subset and evaluation context

This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

3 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Source location Figure 4 source CSV row 3, column 4 Context-only references	BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 Original source ↗ Figure 4 source CSV row 3, column 4 Version: 10.1038/s41592-019-0690-6 source data published 2020 Retrieved: 2026-09-19	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `3582523c27176f7573e62fc3fa11843076568b9ce522e556cd2a6973029c90cb` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact
Description Source-defined subset: HSC. Exact membership and scoring coverage remain as reported in the cited artifact. Context-only references	BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 Original source ↗ Figure 4 source CSV row 3, column 4 Version: 10.1038/s41592-019-0690-6 source data published 2020 Retrieved: 2026-09-19	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `3582523c27176f7573e62fc3fa11843076568b9ce522e556cd2a6973029c90cb` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact
Name HSC Context-only references	BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 Original source ↗ Figure 4 source CSV row 3, column 4 Version: 10.1038/s41592-019-0690-6 source data published 2020 Retrieved: 2026-09-19	not individually reviewed No individual claim review recorded Audit details Field: `name` Source artifact SHA-256: `3582523c27176f7573e62fc3fa11843076568b9ce522e556cd2a6973029c90cb` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: discovered

1 source record and release history

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Original source · 10.1038/s41592-019-0690-6 source data published 2020

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Technical metadata and extraction receipts

Stable ID: acquired-dataset-af9a9ee57b3d1239db18

source locator: Figure 4 source CSV row 3, column 4
missing metadata: split manifest: reason: unextracted

Related records

data: GRNVBEM · BEELINE 2020 Figure 4 · HSC
data: PPCOR · BEELINE 2020 Figure 4 · HSC
data: PIDC · BEELINE 2020 Figure 4 · HSC
data: SCRIBE · BEELINE 2020 Figure 4 · HSC
data: LEAP · BEELINE 2020 Figure 4 · HSC
data: GENIE3 · BEELINE 2020 Figure 4 · HSC
data: GRNBOOST2 · BEELINE 2020 Figure 4 · HSC
data: SCNS · BEELINE 2020 Figure 4 · HSC
data: SINCERITIES · BEELINE 2020 Figure 4 · HSC
data: GRISLI · BEELINE 2020 Figure 4 · HSC
data: SCODE · BEELINE 2020 Figure 4 · HSC
data: SINGE · BEELINE 2020 Figure 4 · HSC

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