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Release 2026-09-30-e37e3ab1284d · Evidence verified: Not verified
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5 evaluations · 20 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: AlphaFold 3 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.92 gdt-ts fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, GDT-TS row, AlphaFold 3 column; Table 1 assessable count |
| Configuration: AlphaFold 3 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.88 lddt fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, LDDT row, AlphaFold 3 column; Table 1 assessable count |
| Configuration: AlphaFold 3 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 1.95 rmsd angstrom · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, RMSD row, AlphaFold 3 column; Table 1 assessable count |
| Configuration: AlphaFold 3 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.94 tm-score fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, TM-score row, AlphaFold 3 column; Table 1 assessable count |
| Configuration: Boltz-1 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.91 gdt-ts fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer boltz1 Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, GDT-TS row, Boltz-1 column; Table 1 assessable count |
| Configuration: Boltz-1 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.87 lddt fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer boltz1 Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, LDDT row, Boltz-1 column; Table 1 assessable count |
| Configuration: Boltz-1 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 1.97 rmsd angstrom · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer boltz1 Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, RMSD row, Boltz-1 column; Table 1 assessable count |
| Configuration: Boltz-1 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.94 tm-score fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer boltz1 Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, TM-score row, Boltz-1 column; Table 1 assessable count |
| Configuration: Chai-1 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.9 gdt-ts fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer chai1 Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, GDT-TS row, Chai-1 column; Table 1 assessable count |
| Configuration: Chai-1 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.87 lddt fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer chai1 Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, LDDT row, Chai-1 column; Table 1 assessable count |
| Configuration: Chai-1 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 2.1 rmsd angstrom · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer chai1 Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, RMSD row, Chai-1 column; Table 1 assessable count |
| Configuration: Chai-1 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.93 tm-score fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer chai1 Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, TM-score row, Chai-1 column; Table 1 assessable count |
| Configuration: HelixFold 3 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.91 gdt-ts fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer helixfold3 Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, GDT-TS row, HelixFold 3 column; Table 1 assessable count |
| Configuration: HelixFold 3 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.86 lddt fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer helixfold3 Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, LDDT row, HelixFold 3 column; Table 1 assessable count |
| Configuration: HelixFold 3 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 2.03 rmsd angstrom · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer helixfold3 Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, RMSD row, HelixFold 3 column; Table 1 assessable count |
| Configuration: HelixFold 3 — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.94 tm-score fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer helixfold3 Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, TM-score row, HelixFold 3 column; Table 1 assessable count |
| Configuration: Protenix — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.9 gdt-ts fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer protenix Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, GDT-TS row, Protenix column; Table 1 assessable count |
| Configuration: Protenix — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.86 lddt fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer protenix Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, LDDT row, Protenix column; Table 1 assessable count |
| Configuration: Protenix — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 2.04 rmsd angstrom · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer protenix Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, RMSD row, Protenix column; Table 1 assessable count |
| Configuration: Protenix — FoldBench published inference | Protocol: FoldBench protein-monomer published full-set assessment Dataset: FoldBench protein-monomer published targets | 0.93 tm-score fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcefoldbench protein monomer protenix Not reported Aggregation: source table mean FoldBench supplementary target coverage and performance · Supplementary Table 3, protein-monomer block, TM-score row, Protenix column; Table 1 assessable count |
Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.scope structure accuracy; no intervention utility Context-only references | Benchmarking all-atom biomolecular structure prediction with FoldBench No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41467-025-67127-3 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.scope structure accuracy; no intervention utility Context-only references | FoldBench supplementary target coverage and performance No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplementary Information to 10.1038/s41467-025-67127-3 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.total_targets 334 Context-only references | Benchmarking all-atom biomolecular structure prediction with FoldBench No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41467-025-67127-3 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.total_targets 334 Context-only references | FoldBench supplementary target coverage and performance No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplementary Information to 10.1038/s41467-025-67127-3 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.version published Supplementary Tables 1–3 Context-only references | Benchmarking all-atom biomolecular structure prediction with FoldBench No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41467-025-67127-3 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.version published Supplementary Tables 1–3 Context-only references | FoldBench supplementary target coverage and performance No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplementary Information to 10.1038/s41467-025-67127-3 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Full-set task population; distinct model failures mean assessable subsets differ. Source Table 1 is authoritative for this snapshot. Context-only references | Benchmarking all-atom biomolecular structure prediction with FoldBench No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41467-025-67127-3 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Full-set task population; distinct model failures mean assessable subsets differ. Source Table 1 is authoritative for this snapshot. Context-only references | FoldBench supplementary target coverage and performance No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplementary Information to 10.1038/s41467-025-67127-3 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name FoldBench protein-monomer published targets Context-only references | Benchmarking all-atom biomolecular structure prediction with FoldBench No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41467-025-67127-3 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name FoldBench protein-monomer published targets Context-only references | FoldBench supplementary target coverage and performance No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Supplementary Information to 10.1038/s41467-025-67127-3 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-30-e37e3ab1284d · Record review: source checked
Stable ID: ucc-research-data-foldbench-protein-monomer