rewire.itbenchmarks
Dataset

ACG trios: Exomiser SNV/indel comparison as reported in Results

Results and Methods describe 194 SNV/indel-diagnosed families. Extended Data Fig. 1 instead states N=190; this discrepancy is unresolved.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-30-e37e3ab1284d · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • recipe pinned: verification is missing
  • resource estimate: verification is missing

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

1 evaluation · 8 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: Exomiser v14 default, Talos 2026 comparisonProtocol: Exomiser rank-budget recovery in ACG trios
Dataset: ACG trios: Exomiser SNV/indel comparison as reported in Results
172 recovered_cases_all
count · unknown

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Exomiser v14 ACG trio rank-budget evaluation

Not reported

Aggregation: Not reported

Automated reanalysis of genomic data for rare disease diagnostics at scale · Results, Comparison with other tools, rank all
Configuration: Exomiser v14 default, Talos 2026 comparisonProtocol: Exomiser rank-budget recovery in ACG trios
Dataset: ACG trios: Exomiser SNV/indel comparison as reported in Results
89% case_recovery_all
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Exomiser v14 ACG trio rank-budget evaluation

Not reported

Aggregation: Not reported

Automated reanalysis of genomic data for rare disease diagnostics at scale · Results, Comparison with other tools, rank all
Configuration: Exomiser v14 default, Talos 2026 comparisonProtocol: Exomiser rank-budget recovery in ACG trios
Dataset: ACG trios: Exomiser SNV/indel comparison as reported in Results
127 recovered_cases_top1
count · unknown

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Exomiser v14 ACG trio rank-budget evaluation

Not reported

Aggregation: Not reported

Automated reanalysis of genomic data for rare disease diagnostics at scale · Results, Comparison with other tools, rank top1
Configuration: Exomiser v14 default, Talos 2026 comparisonProtocol: Exomiser rank-budget recovery in ACG trios
Dataset: ACG trios: Exomiser SNV/indel comparison as reported in Results
65% case_recovery_top1
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Exomiser v14 ACG trio rank-budget evaluation

Not reported

Aggregation: Not reported

Automated reanalysis of genomic data for rare disease diagnostics at scale · Results, Comparison with other tools, rank top1
Configuration: Exomiser v14 default, Talos 2026 comparisonProtocol: Exomiser rank-budget recovery in ACG trios
Dataset: ACG trios: Exomiser SNV/indel comparison as reported in Results
164 recovered_cases_top10
count · unknown

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Exomiser v14 ACG trio rank-budget evaluation

Not reported

Aggregation: Not reported

Automated reanalysis of genomic data for rare disease diagnostics at scale · Results, Comparison with other tools, rank top10
Configuration: Exomiser v14 default, Talos 2026 comparisonProtocol: Exomiser rank-budget recovery in ACG trios
Dataset: ACG trios: Exomiser SNV/indel comparison as reported in Results
85% case_recovery_top10
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Exomiser v14 ACG trio rank-budget evaluation

Not reported

Aggregation: Not reported

Automated reanalysis of genomic data for rare disease diagnostics at scale · Results, Comparison with other tools, rank top10
Configuration: Exomiser v14 default, Talos 2026 comparisonProtocol: Exomiser rank-budget recovery in ACG trios
Dataset: ACG trios: Exomiser SNV/indel comparison as reported in Results
157 recovered_cases_top5
count · unknown

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Exomiser v14 ACG trio rank-budget evaluation

Not reported

Aggregation: Not reported

Automated reanalysis of genomic data for rare disease diagnostics at scale · Results, Comparison with other tools, rank top5
Configuration: Exomiser v14 default, Talos 2026 comparisonProtocol: Exomiser rank-budget recovery in ACG trios
Dataset: ACG trios: Exomiser SNV/indel comparison as reported in Results
81% case_recovery_top5
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Exomiser v14 ACG trio rank-budget evaluation

Not reported

Aggregation: Not reported

Automated reanalysis of genomic data for rare disease diagnostics at scale · Results, Comparison with other tools, rank top5

Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

4 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-30-e37e3ab1284d
Property and statementOriginal source and locationReview and provenance
attributes.conflicting_denominator
190
Context-only references
Automated reanalysis of genomic data for rare disease diagnostics at scale

Original source ↗

No field-specific location recorded

Version: Nature Medicine 2026 final publication, 24 June 2026
Retrieved: 2026-09-30T21:24:16Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.conflicting_denominator

Source artifact SHA-256: 629b9578ac42717245256feca69dc9c9d5442deb7d282dd1bdc5a6c1a1efd2ec

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.reported_denominator
194
Context-only references
Automated reanalysis of genomic data for rare disease diagnostics at scale

Original source ↗

No field-specific location recorded

Version: Nature Medicine 2026 final publication, 24 June 2026
Retrieved: 2026-09-30T21:24:16Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.reported_denominator

Source artifact SHA-256: 629b9578ac42717245256feca69dc9c9d5442deb7d282dd1bdc5a6c1a1efd2ec

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

description
Results and Methods describe 194 SNV/indel-diagnosed families. Extended Data Fig. 1 instead states N=190; this discrepancy is unresolved.
Context-only references
Automated reanalysis of genomic data for rare disease diagnostics at scale

Original source ↗

No field-specific location recorded

Version: Nature Medicine 2026 final publication, 24 June 2026
Retrieved: 2026-09-30T21:24:16Z

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 629b9578ac42717245256feca69dc9c9d5442deb7d282dd1bdc5a6c1a1efd2ec

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

name
ACG trios: Exomiser SNV/indel comparison as reported in Results
Context-only references
Automated reanalysis of genomic data for rare disease diagnostics at scale

Original source ↗

No field-specific location recorded

Version: Nature Medicine 2026 final publication, 24 June 2026
Retrieved: 2026-09-30T21:24:16Z

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 629b9578ac42717245256feca69dc9c9d5442deb7d282dd1bdc5a6c1a1efd2ec

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-30-e37e3ab1284d · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: uc-clinical-20260930-exomiser-acg-data

areas
dna-genomes
contexts
clinical_research
reported denominator
194
conflicting denominator
190
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