rewire.itbenchmarks
Dataset

mRNA-RBP pairs

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

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Verified: Not verified

Evidence incomplete

Investigate discrepancies

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Missing or unresolved evidence

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  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
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Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
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Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Pipeline: ProteinBERT LLM-encoding modelTask: mRNA-protein interaction prediction
Dataset: mRNA-RBP pairs
71.5% AUROC
percent · unknown

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ProteinBERT LLM-encoding model: mRNA-protein interaction prediction

LLM encoding of protein partner; RBP-aware partition tests generalization to unseen protein diversity

Aggregation: Not reported

Generalizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity · Table 2, RBP-aware test set row, auROC (%) column

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

4 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.split
RBP-aware test set
Context-only references
Generalizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity

Original source ↗

No field-specific location recorded

Version: version of record
Retrieved: 2026-09-16T10:33:57.257Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.split

Source artifact SHA-256: 94f9fe22a5f0e6c8619e4af994eb4f6ded7417efcf0c1240380269280f97f9d1

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.version
Not reported
Context-only references
Generalizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity

Original source ↗

No field-specific location recorded

Version: version of record
Retrieved: 2026-09-16T10:33:57.257Z

missing or unspecified

No individual claim review recorded

Audit details

Field: attributes.version

Source artifact SHA-256: 94f9fe22a5f0e6c8619e4af994eb4f6ded7417efcf0c1240380269280f97f9d1

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

description
No value recorded
Context-only references
Generalizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity

Original source ↗

No field-specific location recorded

Version: version of record
Retrieved: 2026-09-16T10:33:57.257Z

missing or unspecified

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 94f9fe22a5f0e6c8619e4af994eb4f6ded7417efcf0c1240380269280f97f9d1

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

name
mRNA-RBP pairs
Context-only references
Generalizable deep-learning-based mRNA-protein interaction prediction strongly depends on protein diversity

Original source ↗

No field-specific location recorded

Version: version of record
Retrieved: 2026-09-16T10:33:57.257Z

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 94f9fe22a5f0e6c8619e4af994eb4f6ded7417efcf0c1240380269280f97f9d1

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: needs review

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: reported-dataset-2e87449871ca47

areas
rna-transcriptomes
version
Not reported
split
RBP-aware test set
missing metadata
version: not_reported_in_legacy_extract; accession: not_reported_in_legacy_extract
entity classification
review date: 2026-09-17; rationale: This record identifies a biological data collection or source-labelled evaluation cohort. Keep its dataset identity; split, assay, taxonomic level, candidate restrictions and comparison context remain attributes rather than automatically becoming new entity kinds.; source ids: mrna-protein-diversity-2026; source locator: Datasets and methods; ground-truth dataset construction; cached text lines 8–13; task metric definitions and corresponding results table; matching task comparison table/ablation captions; ambiguities: None recorded
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