| Configuration: Shallow CNN | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 93.76(0.66)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.66; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceShallow CNN: SugarBase taxonomy · Domain Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Domain |
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| Configuration: ResNet | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 93.29(1.46)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 1.46; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceResNet: SugarBase taxonomy · Domain Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row ResNet, column Domain |
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| Configuration: Shallow CNN / GN | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 92.96(0.49)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.49; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceShallow CNN / GN: SugarBase taxonomy · Domain Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, GN, column Domain |
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| Configuration: CompGCN | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 93.94(0.41)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.41; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCompGCN: SugarBase taxonomy · Domain Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row CompGCN, column Domain |
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| Configuration: RGCN | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 94.78(0.11)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.11; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRGCN: SugarBase taxonomy · Domain Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row RGCN, column Domain |
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| Configuration: Shallow CNN / DWA | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 93.25(0.82)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.82; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceShallow CNN / DWA: SugarBase taxonomy · Domain Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, DWA, column Domain |
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| Configuration: Transformer | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 91.98(0.27)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.27; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTransformer: SugarBase taxonomy · Domain Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Transformer, column Domain |
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| Configuration: MPNN | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 93.83(0.17)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.17; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceMPNN: SugarBase taxonomy · Domain Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row MPNN, column Domain |
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| Configuration: Shallow CNN / DTP | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 93.54(0.41)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.41; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceShallow CNN / DTP: SugarBase taxonomy · Domain Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, DTP, column Domain |
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| Configuration: RGCN / N-MTL | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 93.04(1.80)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 1.8; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRGCN / N-MTL: SugarBase taxonomy · Domain Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, RGCN, N-MTL, column Domain |
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| Configuration: RGCN / GN | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 93.73(0.72)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.72; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRGCN / GN: SugarBase taxonomy · Domain Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, RGCN, GN, column Domain |
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| Configuration: Shallow CNN / UW | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 92.93(0.94)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.94; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceShallow CNN / UW: SugarBase taxonomy · Domain Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, UW, column Domain |
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| Configuration: GAT | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 94.27(0.41)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.41; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGAT: SugarBase taxonomy · Domain Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row GAT, column Domain |
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| Configuration: RGCN / DWA | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 94.09(0.50)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.5; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRGCN / DWA: SugarBase taxonomy · Domain Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, RGCN, DWA, column Domain |
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| Configuration: RGCN / DTP | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 94.02(0.66)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.66; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRGCN / DTP: SugarBase taxonomy · Domain Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, RGCN, DTP, column Domain |
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| Configuration: GIN | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 94.41(0.17)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.17; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGIN: SugarBase taxonomy · Domain Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row GIN, column Domain |
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| Configuration: Shallow CNN / TS | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 93.58(0.50)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.5; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceShallow CNN / TS: SugarBase taxonomy · Domain Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, TS, column Domain |
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| Configuration: LSTM | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 92.78(1.16)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 1.16; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceLSTM: SugarBase taxonomy · Domain Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row LSTM, column Domain |
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| Configuration: RGCN / TS | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 94.52(0.23)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.23; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRGCN / TS: SugarBase taxonomy · Domain Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, RGCN, TS, column Domain |
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| Configuration: GCN | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 94.38(0.51)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.51; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGCN: SugarBase taxonomy · Domain Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row GCN, column Domain |
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| Configuration: RGCN / UW | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 93.43(0.56)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.56; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRGCN / UW: SugarBase taxonomy · Domain Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, RGCN, UW, column Domain |
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| Configuration: Shallow CNN / N-MTL | Protocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction) Dataset: SugarBase taxonomy · Domain | 93.25(0.38)% accuracy percent · higher Uncertainty: type: standard_deviation; value: 0.38; n: 3; unit: same_as_metric Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceShallow CNN / N-MTL: SugarBase taxonomy · Domain Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Aggregation: Not reported GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, N-MTL, column Domain |
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