Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage.
These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.
Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.
Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
3 evaluations · 15 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: ESM2_DPM | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.98 F1 Score fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_DPM, column F1 Score; XML row4 column4 |
| Configuration: ESM2_AMP_CSE | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.994 AUC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column AUC; XML row3 column5 |
| Configuration: ESM2_DPM | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.996 AUC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_DPM, column AUC; XML row4 column5 |
| Configuration: ESM2_DPM | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.961 MCC dimensionless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_DPM, column MCC; XML row4 column6 |
| Configuration: ESM2_AMP_CSE | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.974 Recall fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column Recall; XML row3 column3 |
| Configuration: ESM2_AMPS | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.995 AUC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMPS, column AUC; XML row2 column5 |
| Configuration: ESM2_AMPS | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.955 MCC dimensionless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMPS, column MCC; XML row2 column6 |
| Configuration: ESM2_AMP_CSE | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.957 MCC dimensionless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column MCC; XML row3 column6 |
| Configuration: ESM2_AMPS | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.978 Accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMPS, column Accuracy; XML row2 column2 |
| Configuration: ESM2_DPM | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.98 Accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_DPM, column Accuracy; XML row4 column2 |
| Configuration: ESM2_AMP_CSE | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.979 F1 Score fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column F1 Score; XML row3 column4 |
| Configuration: ESM2_AMP_CSE | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.979 Accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column Accuracy; XML row3 column2 |
| Configuration: ESM2_AMPS | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.978 F1 Score fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMPS, column F1 Score; XML row2 column4 |
| Configuration: ESM2_AMPS | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.971 Recall fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMPS, column Recall; XML row2 column3 |
| Configuration: ESM2_DPM | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.974 Recall fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_DPM, column Recall; XML row4 column3 |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
6 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.reported_population Not reported Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | missing or unspecified No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.split Pan_dataset; Table 2 five-fold cross-validation. Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.subset Pan_dataset five-fold PPI cross-validation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage. Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name Pan_dataset five-fold PPI cross-validation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: paper-dataset-1de23e14845ef72241