Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage.
3 evaluations · 15 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: ESM2_DPM | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.98 F1 fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_DPM, column F1 Score; XML row4 column4 |
| Configuration: ESM2_AMP_CSE | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.994 AUROC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column AUC; XML row3 column5 |
| Configuration: ESM2_DPM | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.996 AUROC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_DPM, column AUC; XML row4 column5 |
| Configuration: ESM2_DPM | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.961 MCC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_DPM, column MCC; XML row4 column6 |
| Configuration: ESM2_AMP_CSE | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.974 Recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column Recall; XML row3 column3 |
| Configuration: ESM2_AMPS | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.995 AUROC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMPS, column AUC; XML row2 column5 |
| Configuration: ESM2_AMPS | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.955 MCC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMPS, column MCC; XML row2 column6 |
| Configuration: ESM2_AMP_CSE | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.957 MCC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column MCC; XML row3 column6 |
| Configuration: ESM2_AMPS | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.978 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMPS, column Accuracy; XML row2 column2 |
| Configuration: ESM2_DPM | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.98 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_DPM, column Accuracy; XML row4 column2 |
| Configuration: ESM2_AMP_CSE | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.979 F1 fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column F1 Score; XML row3 column4 |
| Configuration: ESM2_AMP_CSE | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.979 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMP_CSE: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMP_CSE, column Accuracy; XML row3 column2 |
| Configuration: ESM2_AMPS | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.978 F1 fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMPS, column F1 Score; XML row2 column4 |
| Configuration: ESM2_AMPS | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.971 Recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_AMPS: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_AMPS, column Recall; XML row2 column3 |
| Configuration: ESM2_DPM | Protocol: Pan_dataset five-fold PPI cross-validation (protein-protein interaction prediction) Dataset: Pan_dataset five-fold PPI cross-validation | 0.974 Recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2_DPM: Pan_dataset five-fold PPI cross-validation ESM 2_AMPS, ESM 2_AMP_CSE and ESM 2_DPM evaluated as complete PPI pipelines. Pan_dataset; Table 2 five-fold cross-validation. Aggregation: Not reported ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery · Table 2, row ESM2_DPM, column Recall; XML row4 column3 |
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| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Source location Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Split Pan_dataset; Table 2 five-fold cross-validation. Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Subset Pan_dataset five-fold PPI cross-validation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Description Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage. Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Name Pan_dataset five-fold PPI cross-validation Context-only references | ESM2_AMP: an interpretable framework for protein–protein interactions prediction and biological mechanism discovery Table 2: Accuracy, Pan_dataset five-fold PPI cross-validation Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-11-02-a7f03c9e55a5 · Record review: needs review
Stable ID: paper-dataset-1de23e14845ef72241