LOL-EVE evaluation data as packaged in GFMBench-API.
6 evaluations · 22 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Caduceus-Ps (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.0861 AUPRC (zero-shot; cosine similarity of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ps on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'Caduceus-Ps', column 'Cos AUPRC' |
| Configuration: Caduceus-Ps (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.524 AUROC (zero-shot; cosine similarity of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ps on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'Caduceus-Ps', column 'Cos AUROC' |
| Configuration: Caduceus-Ps (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.0863 AUPRC (zero-shot; L2 distance of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ps on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'Caduceus-Ps', column 'L2 AUPRC' |
| Configuration: Caduceus-Ps (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.522 AUROC (zero-shot; L2 distance of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ps on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'Caduceus-Ps', column 'L2 AUROC' |
| Configuration: DNA-BERT (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.0676 AUPRC (zero-shot; cosine similarity of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNA-BERT on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'DNA-BERT', column 'Cos AUPRC' |
| Configuration: DNA-BERT (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.448 AUROC (zero-shot; cosine similarity of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNA-BERT on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'DNA-BERT', column 'Cos AUROC' |
| Configuration: DNA-BERT (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.0681 AUPRC (zero-shot; L2 distance of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNA-BERT on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'DNA-BERT', column 'L2 AUPRC' |
| Configuration: DNA-BERT (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.449 AUROC (zero-shot; L2 distance of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNA-BERT on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'DNA-BERT', column 'L2 AUROC' |
| Configuration: DNABERT-2 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.105 AUPRC (zero-shot; cosine similarity of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT-2 on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'DNABERT-2', column 'Cos AUPRC' |
| Configuration: DNABERT-2 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.601 AUROC (zero-shot; cosine similarity of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT-2 on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'DNABERT-2', column 'Cos AUROC' |
| Configuration: DNABERT-2 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.0947 AUPRC (zero-shot; L2 distance of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT-2 on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'DNABERT-2', column 'L2 AUPRC' |
| Configuration: DNABERT-2 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.579 AUROC (zero-shot; L2 distance of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT-2 on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'DNABERT-2', column 'L2 AUROC' |
| Configuration: Evo2 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-ar-llr Dataset: LOL-EVE test set (GFMBench-API) | 0.109 AUPRC (zero-shot; autoregressive log-likelihood ratio over mean token probabilities) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2 on GFMBench-API LOL-EVE (zs-ar-llr) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-ar-llr Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 5, task 'LOL-EVE', row 'Evo2', column 'Mean LLR PRC' |
| Configuration: Evo2 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-ar-llr Dataset: LOL-EVE test set (GFMBench-API) | 0.548 AUROC (zero-shot; autoregressive log-likelihood ratio over mean token probabilities) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2 on GFMBench-API LOL-EVE (zs-ar-llr) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-ar-llr Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 5, task 'LOL-EVE', row 'Evo2', column 'Mean LLR ROC' |
| Configuration: Evo2 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.0845 AUPRC (zero-shot; cosine similarity of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2 on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'Evo2', column 'Cos AUPRC' |
| Configuration: Evo2 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.531 AUROC (zero-shot; cosine similarity of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2 on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'Evo2', column 'Cos AUROC' |
| Configuration: Evo2 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.0938 AUPRC (zero-shot; L2 distance of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2 on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'Evo2', column 'L2 AUPRC' |
| Configuration: Evo2 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.543 AUROC (zero-shot; L2 distance of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2 on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'Evo2', column 'L2 AUROC' |
| Configuration: NTv3 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.0867 AUPRC (zero-shot; cosine similarity of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNTv3 on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'NTv3', column 'Cos AUPRC' |
| Configuration: NTv3 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.495 AUROC (zero-shot; cosine similarity of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNTv3 on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'NTv3', column 'Cos AUROC' |
| Configuration: NTv3 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.0903 AUPRC (zero-shot; L2 distance of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNTv3 on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'NTv3', column 'L2 AUPRC' |
| Configuration: NTv3 (zero-shot, GFMBench-API) | Protocol: GFMBench-API LOL-EVE, zs-embedding Dataset: LOL-EVE test set (GFMBench-API) | 0.503 AUROC (zero-shot; L2 distance of reference and alternate sequence embeddings) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNTv3 on GFMBench-API LOL-EVE (zs-embedding) lit-genomics-20261011-gfmbench-protocol-lol-eve-zs-embedding Aggregation: Not reported GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models · Table 3, task 'LOL-EVE', row 'NTv3', column 'L2 AUROC' |
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| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Source location Appendix task descriptions Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Appendix task descriptions Version: bioRxiv preprint version 2, posted 2026-08-11 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split Test split as defined in GFMBench-API Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Appendix task descriptions Version: bioRxiv preprint version 2, posted 2026-08-11 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description LOL-EVE evaluation data as packaged in GFMBench-API. Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Appendix task descriptions Version: bioRxiv preprint version 2, posted 2026-08-11 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name LOL-EVE test set (GFMBench-API) Context-only references | GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models Appendix task descriptions Version: bioRxiv preprint version 2, posted 2026-08-11 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-genomics-20261011-gfmbench-data-lol-eve