| Configuration: BLAST 2.12.0 blastn, top hit (Bůžková et al. 2026) | Protocol: RVDB viral classification: best frozen-embedding configuration against BLAST (Bůžková et al. 2026 Table 7) Dataset: RVDB C-RVDB v31.0 primary dataset, 40 sampled classes | 0.912 Accuracy (40-class RVDB dataset) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceblastn on the RVDB 40-class dataset (BLAST comparison) gfm2-20261011-buzkova2026-protocol-blast-compare Aggregation: Not reported Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 7, row '40 classes / blastn', column 'Accuracy' |
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| Configuration: BLAST 2.12.0 blastn, top hit (Bůžková et al. 2026) | Protocol: RVDB viral classification: best frozen-embedding configuration against BLAST (Bůžková et al. 2026 Table 7) Dataset: RVDB C-RVDB v31.0 primary dataset, 40 sampled classes | 0.889 Macro F1 (40-class RVDB dataset) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceblastn on the RVDB 40-class dataset (BLAST comparison) gfm2-20261011-buzkova2026-protocol-blast-compare Aggregation: Not reported Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 7, row '40 classes / blastn', column 'F1' |
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| Configuration: BLAST 2.12.0 blastn, top hit (Bůžková et al. 2026) | Protocol: RVDB viral classification: best frozen-embedding configuration against BLAST (Bůžková et al. 2026 Table 7) Dataset: RVDB C-RVDB v31.0 primary dataset, 40 sampled classes | 0.892 Precision (40-class RVDB dataset, macro-averaged over classes) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceblastn on the RVDB 40-class dataset (BLAST comparison) gfm2-20261011-buzkova2026-protocol-blast-compare Aggregation: Not reported Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 7, row '40 classes / blastn', column 'Precision' |
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| Configuration: BLAST 2.12.0 blastn, top hit (Bůžková et al. 2026) | Protocol: RVDB viral classification: best frozen-embedding configuration against BLAST (Bůžková et al. 2026 Table 7) Dataset: RVDB C-RVDB v31.0 primary dataset, 40 sampled classes | 0.89 Recall (40-class RVDB dataset, macro-averaged over classes) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceblastn on the RVDB 40-class dataset (BLAST comparison) gfm2-20261011-buzkova2026-protocol-blast-compare Aggregation: Not reported Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 7, row '40 classes / blastn', column 'Recall' |
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| Configuration: BLAST 2.12.0 megablast, top hit (Bůžková et al. 2026) | Protocol: RVDB viral classification: best frozen-embedding configuration against BLAST (Bůžková et al. 2026 Table 7) Dataset: RVDB C-RVDB v31.0 primary dataset, 40 sampled classes | 0.849 Accuracy (40-class RVDB dataset) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemegablast on the RVDB 40-class dataset (BLAST comparison) gfm2-20261011-buzkova2026-protocol-blast-compare Aggregation: Not reported Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 7, row '40 classes / megablast', column 'Accuracy' |
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| Configuration: BLAST 2.12.0 megablast, top hit (Bůžková et al. 2026) | Protocol: RVDB viral classification: best frozen-embedding configuration against BLAST (Bůžková et al. 2026 Table 7) Dataset: RVDB C-RVDB v31.0 primary dataset, 40 sampled classes | 0.851 Macro F1 (40-class RVDB dataset) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemegablast on the RVDB 40-class dataset (BLAST comparison) gfm2-20261011-buzkova2026-protocol-blast-compare Aggregation: Not reported Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 7, row '40 classes / megablast', column 'F1' |
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| Configuration: BLAST 2.12.0 megablast, top hit (Bůžková et al. 2026) | Protocol: RVDB viral classification: best frozen-embedding configuration against BLAST (Bůžková et al. 2026 Table 7) Dataset: RVDB C-RVDB v31.0 primary dataset, 40 sampled classes | 0.906 Precision (40-class RVDB dataset, macro-averaged over classes) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemegablast on the RVDB 40-class dataset (BLAST comparison) gfm2-20261011-buzkova2026-protocol-blast-compare Aggregation: Not reported Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 7, row '40 classes / megablast', column 'Precision' |
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| Configuration: BLAST 2.12.0 megablast, top hit (Bůžková et al. 2026) | Protocol: RVDB viral classification: best frozen-embedding configuration against BLAST (Bůžková et al. 2026 Table 7) Dataset: RVDB C-RVDB v31.0 primary dataset, 40 sampled classes | 0.828 Recall (40-class RVDB dataset, macro-averaged over classes) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcemegablast on the RVDB 40-class dataset (BLAST comparison) gfm2-20261011-buzkova2026-protocol-blast-compare Aggregation: Not reported Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 7, row '40 classes / megablast', column 'Recall' |
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| Configuration: NTv3-650M, frozen embeddings, max, all tokens pooling, 1-NN (Bůžková et al. 2026) | Protocol: RVDB viral classification: best frozen-embedding configuration against BLAST (Bůžková et al. 2026 Table 7) Dataset: RVDB C-RVDB v31.0 primary dataset, 40 sampled classes | 0.875 Accuracy (40-class RVDB dataset) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNTv3-650M (max) on the RVDB 40-class dataset (BLAST comparison) gfm2-20261011-buzkova2026-protocol-blast-compare Aggregation: Not reported Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 7, row '40 classes / NTv3-650M (max)', column 'Accuracy' |
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| Configuration: NTv3-650M, frozen embeddings, max, all tokens pooling, 1-NN (Bůžková et al. 2026) | Protocol: RVDB viral classification: best frozen-embedding configuration against BLAST (Bůžková et al. 2026 Table 7) Dataset: RVDB C-RVDB v31.0 primary dataset, 40 sampled classes | 0.874 Macro F1 (40-class RVDB dataset) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNTv3-650M (max) on the RVDB 40-class dataset (BLAST comparison) gfm2-20261011-buzkova2026-protocol-blast-compare Aggregation: Not reported Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 7, row '40 classes / NTv3-650M (max)', column 'F1' |
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| Configuration: NTv3-650M, frozen embeddings, max, all tokens pooling, 1-NN (Bůžková et al. 2026) | Protocol: RVDB viral classification: best frozen-embedding configuration against BLAST (Bůžková et al. 2026 Table 7) Dataset: RVDB C-RVDB v31.0 primary dataset, 40 sampled classes | 0.874 Precision (40-class RVDB dataset, macro-averaged over classes) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNTv3-650M (max) on the RVDB 40-class dataset (BLAST comparison) gfm2-20261011-buzkova2026-protocol-blast-compare Aggregation: Not reported Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 7, row '40 classes / NTv3-650M (max)', column 'Precision' |
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| Configuration: NTv3-650M, frozen embeddings, max, all tokens pooling, 1-NN (Bůžková et al. 2026) | Protocol: RVDB viral classification: best frozen-embedding configuration against BLAST (Bůžková et al. 2026 Table 7) Dataset: RVDB C-RVDB v31.0 primary dataset, 40 sampled classes | 0.875 Recall (40-class RVDB dataset, macro-averaged over classes) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNTv3-650M (max) on the RVDB 40-class dataset (BLAST comparison) gfm2-20261011-buzkova2026-protocol-blast-compare Aggregation: Not reported Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 7, row '40 classes / NTv3-650M (max)', column 'Recall' |
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