| Configuration: Bracken (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0.06 f-beta-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBracken on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Bracken' (table row 52), column 'F0.5' |
|---|
| Configuration: Bracken (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0.1 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBracken on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Bracken' (table row 52), column 'F1' |
|---|
| Configuration: Bracken (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0 false-negative-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBracken on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Bracken' (table row 52), column 'False negatives' |
|---|
| Configuration: Bracken (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 184 false-positive-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBracken on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Bracken' (table row 52), column 'False positives' |
|---|
| Configuration: Bracken (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 17% composition-l1-distance percent · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBracken on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Bracken' (table row 52), column 'L1' |
|---|
| Configuration: Bracken (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0.05 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBracken on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Bracken' (table row 52), column 'Precision' |
|---|
| Configuration: Bracken (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 1 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBracken on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Bracken' (table row 52), column 'Recall' |
|---|
| Configuration: Bracken (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 10 true-positive-count count · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBracken on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Bracken' (table row 52), column 'True positives' |
|---|
| Configuration: BugSeq-V2 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0.93 f-beta-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBugSeq-V2 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'BugSeq-V2' (table row 64), column 'F0.5' |
|---|
| Configuration: BugSeq-V2 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0.95 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBugSeq-V2 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'BugSeq-V2' (table row 64), column 'F1' |
|---|
| Configuration: BugSeq-V2 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0 false-negative-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBugSeq-V2 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'BugSeq-V2' (table row 64), column 'False negatives' |
|---|
| Configuration: BugSeq-V2 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 1 false-positive-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBugSeq-V2 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'BugSeq-V2' (table row 64), column 'False positives' |
|---|
| Configuration: BugSeq-V2 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 12.6% composition-l1-distance percent · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBugSeq-V2 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'BugSeq-V2' (table row 64), column 'L1' |
|---|
| Configuration: BugSeq-V2 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0.91 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBugSeq-V2 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'BugSeq-V2' (table row 64), column 'Precision' |
|---|
| Configuration: BugSeq-V2 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 1 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBugSeq-V2 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'BugSeq-V2' (table row 64), column 'Recall' |
|---|
| Configuration: BugSeq-V2 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 10 true-positive-count count · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBugSeq-V2 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'BugSeq-V2' (table row 64), column 'True positives' |
|---|
| Configuration: Centrifuge-h22 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0.18 f-beta-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCentrifuge-h22 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Centrifuge-h22' (table row 53), column 'F0.5' |
|---|
| Configuration: Centrifuge-h22 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0.25 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCentrifuge-h22 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Centrifuge-h22' (table row 53), column 'F1' |
|---|
| Configuration: Centrifuge-h22 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 2 false-negative-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCentrifuge-h22 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Centrifuge-h22' (table row 53), column 'False negatives' |
|---|
| Configuration: Centrifuge-h22 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 45 false-positive-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCentrifuge-h22 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Centrifuge-h22' (table row 53), column 'False positives' |
|---|
| Configuration: Centrifuge-h22 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 30.7% composition-l1-distance percent · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCentrifuge-h22 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Centrifuge-h22' (table row 53), column 'L1' |
|---|
| Configuration: Centrifuge-h22 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0.15 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCentrifuge-h22 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Centrifuge-h22' (table row 53), column 'Precision' |
|---|
| Configuration: Centrifuge-h22 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0.8 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCentrifuge-h22 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Centrifuge-h22' (table row 53), column 'Recall' |
|---|
| Configuration: Centrifuge-h22 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 8 true-positive-count count · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCentrifuge-h22 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Centrifuge-h22' (table row 53), column 'True positives' |
|---|
| Configuration: Centrifuge-h500 (Portik et al. 2022) | Protocol: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION): species detection at 0.001% of total reads (Portik et al. 2022 Table 4)
Dataset: ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) | 0.44 f-beta-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCentrifuge-h500 on ONT Q20 ZymoBIOMICS D6300 standard, length-filtered (PromethION) dna-pathogen-20261009-protocol-portik2022-ont-q20-zymo-d6300-species Aggregation: Not reported Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Table 4, dataset block 'ONT Q20 Zymo D6300 (10 species, even)', row 'Centrifuge-h500' (table row 54), column 'F0.5' |
|---|