Hidden Markov Model [ProteinGym 144fe22 clinical summary]
Hidden Markov Model, from the ProteinGym clinical reference scores at commit 144fe22b.
Overview
An explanatory profile has not yet been reviewed for this record.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
1 evaluation · 1 result. Different protocols are not a single leaderboard.
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Hidden Markov Model [ProteinGym 144fe22 clinical summary] | Protocol: ProteinGym clinical indels, zero-shot, average AUC (commit 144fe22) Dataset subset: ProteinGym clinical indel benchmark at commit 144fe22 | 0.663 AUROC (ProteinGym clinical indels, zero-shot, Average_AUC over proteins) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Evaluation origin not reported · Source checkedMethods, coverage and sourceHidden Markov Model: ProteinGym clinical indels, zero-shot, average AUC (commit 144fe22) ProteinGym clinical indels, zero-shot, average AUC (commit 144fe22) Aggregation: Not reported ProteinGym clinical zero-shot indels AUC summary at commit 144fe22 · benchmarks/clinical_zero_shot/indels/AUC/Summary_performance_clinical_indels_AUC.csv line 17, row 'Hidden Markov Model', column 'Average_AUC' |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
Use this configuration
How it works, versions and access
Strengths, limitations and unresolved questions
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
0 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|
No evidence rows match these filters. Choose another scope or clear the search.
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
4 source records and release history
- ProteinGym clinical zero-shot substitutions AUC summary at commit 144fe22 · Original source · 144fe22b07dfaeec2b366f2346203a9838a55b4c
- ProteinGym clinical supervised substitutions AUC summary at commit 144fe22 · Original source · 144fe22b07dfaeec2b366f2346203a9838a55b4c
- ProteinGym clinical zero-shot indels AUC summary at commit 144fe22 · Original source · 144fe22b07dfaeec2b366f2346203a9838a55b4c
- OATML-Markslab/ProteinGym / README.md · Original source · Git commit 144fe22b07dfaeec2b366f2346203a9838a55b4c
Technical metadata and extraction receipts
Stable ID: vep-lit-20261014-config-proteingym-clinical-hidden-markov-model
- areas
- proteins-complexes; dna-genomes
- contexts
- clinical_research
- method types
- conventional_pipeline
- reported name
- Hidden Markov Model
- foundation model eligible
- false
- configuration type
- reported_configuration
- version
- ProteinGym commit 144fe22b07dfaeec2b366f2346203a9838a55b4c, label 'Hidden Markov Model'
- access reuse
- Scores distributed by ProteinGym (README 'Clinical Model scores' downloads); original tool terms apply
- source locator
- ProteinGym clinical summary CSVs at 144fe22b07dfaeec2b366f2346203a9838a55b4c, Model_name 'Hidden Markov Model', Model type 'MSA'
- review
- reviewer: claude; reviewer note: Claude review agent; no human review claimed. Independent Claude (Opus 5.5) review agent, separate from the extraction agent that built this batch. Automated review only. Transcription, not reproduction.; reviewed at: 2026-10-14T15:30:00Z; artifact sha256: fbe453d1aaa6c30a1d0adf610f7fc23c36044a8e2548b178d316777383f8fe93; retrieval url: https://raw.githubusercontent.com/OATML-Markslab/ProteinGym/144fe22b07dfaeec2b366f2346203a9838a55b4c/benchmarks/clinical_zero_shot/substitutions/AUC/Summary_performance_clinical_substitutions_AUC.csv; method: ai-assisted-source-review; scope-review; method note: Descriptive fields, identity links and missing-metadata reasons checked against the cited sources.; note: Checked; see the dated review for rulings on identity and method type.
- missing metadata
- checkpoint: reason: unreported
- provenance note
- Hidden Markov Model as listed in the ProteinGym clinical benchmark summary at commit 144fe22.