Profile hidden Markov model (ProteinGym baseline)
Alignment-based profile hidden Markov model baseline that ProteinGym labels 'Hidden Markov Model' in its clinical indel summary.
Results are recorded on linked configurations and versions of this method. Their settings and evaluations are kept separate below.
Results on linked records
This method has no results of its own in this release. One linked record has results. They are not assigned to the underlying method: each record keeps its own settings and evaluations, and its scores are on its own page.
- Hidden Markov Model [ProteinGym 144fe22 clinical summary] Configuration · configuration · 1 evaluation · 1 result
Overview
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Evidence
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Evidence table
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Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- ProteinGym clinical zero-shot indels AUC summary at commit 144fe22 · Original source · 144fe22b07dfaeec2b366f2346203a9838a55b4c
Technical metadata and extraction receipts
Stable ID: vep-lit-20261014-method-proteingym-hmm
- areas
- proteins-complexes
- contexts
- clinical_research
- method types
- conventional_pipeline
- reported name
- Hidden Markov Model
- entity level
- method
- source locator
- Summary_performance_clinical_indels_AUC.csv row 'Hidden Markov Model', Model type 'MSA'
- missing metadata
- version: reason: unreported; note: Implementation and settings not stated in the summary file
- review
- reviewer: claude; reviewer note: Claude review agent; no human review claimed. Independent Claude (Opus 5.5) review agent, separate from the extraction agent that built this batch. Automated review only. Transcription, not reproduction.; reviewed at: 2026-10-14T15:30:00Z; artifact sha256: 98a532c0e2c3d4720b73b7c05cf0dcf0419438c326761aaae3b788799f5aa836; retrieval url: https://raw.githubusercontent.com/OATML-Markslab/ProteinGym/144fe22b07dfaeec2b366f2346203a9838a55b4c/benchmarks/clinical_zero_shot/indels/AUC/Summary_performance_clinical_indels_AUC.csv; method: ai-assisted-source-review; scope-review; method note: Descriptive fields, identity links and missing-metadata reasons checked against the cited sources.; note: Checked; see the dated review for rulings on identity and method type.
Related records
- configuration of: Hidden Markov Model [ProteinGym 144fe22 clinical summary]