CellTypist — scTab Table 1
Tuned CellTypist; training subsampled to 1.5 million cells
Overview
Tuned CellTypist; training subsampled to 1.5 million cells
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
3 evaluations · 4 results. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: CellTypist — scTab Table 1 | Protocol: scTab Table 1b: seeded fits plus donor bootstrap Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.7291 ± 0.0072 macro-f1 fraction · higher Uncertainty: type: source_printed_spread_semantics_conflicting; value: 0.0072; n: 4; note: Heading: confidence intervals; column: standard deviation. Do not interpret as 95% CI. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1b, celltypist row |
| Configuration: CellTypist — scTab Table 1 | Protocol: scTab Table 2 hardware-specific resources Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | ~2000 inference-throughput samples/second · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 2, celltypist, inference time |
| Configuration: CellTypist — scTab Table 1 | Protocol: scTab Table 2 hardware-specific resources Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | ~16h training-hours hours · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 2, celltypist, training time |
| Configuration: CellTypist — scTab Table 1 | Protocol: scTab Table 1a: seeded model fits Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.7304 ± 0.0015 macro-f1 fraction · higher Uncertainty: type: standard_deviation; value: 0.0015; n: 4 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1a, CellTypist row, macro F1 and number-of-runs columns |
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Evidence
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Evidence table
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Sources and history
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Release 2026-09-30-e37e3ab1284d · Record review: source checked
2 source records and release history
- scTab: Scaling cross-tissue single-cell annotation models · Original source · 10.1038/s41467-024-51059-5; published article XML retrieved 2026-09-30
- scTab supplementary comparison tables · Original source · Supplementary Information to 10.1038/s41467-024-51059-5
Technical metadata and extraction receipts
Stable ID: ucc-research-config-sctab-celltypist
- review
- method: automated_source_review; actor: Codex research coverage worker; reviewed at: 2026-09-30T21:43:56Z; note: Primary-source table transcription and scope review; no independent reproduction or human scientific review.
- training setting
- Tuned CellTypist; training subsampled to 1.5 million cells
- missing metadata
- checkpoint sha256: not extracted
Related records
- variant of: CellTypist
- configuration: CellTypist baseline
- configuration: sctab bootstrap celltypist
- configuration: sctab resources celltypist
- configuration: sctab seed celltypist