22.2 million cells, 5,052 donors, 164 cell types; primary datasets deduplicated, 10x-related assays only; rare types <5,000 cells or <30 donors excluded.
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21 evaluations · 26 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: CellTypist — scTab Table 1 | Protocol: scTab Table 1b: seeded fits plus donor bootstrap Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.7291 ± 0.0072 macro-f1 fraction · higher Uncertainty: type: source_printed_spread_semantics_conflicting; value: 0.0072; n: 4; note: Heading: confidence intervals; column: standard deviation. Do not interpret as 95% CI. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1b, celltypist row |
| Configuration: Optimized linear logistic regression — scTab Table 1 | Protocol: scTab Table 1b: seeded fits plus donor bootstrap Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.7846 ± 0.0072 macro-f1 fraction · higher Uncertainty: type: source_printed_spread_semantics_conflicting; value: 0.0072; n: 4; note: Heading: confidence intervals; column: standard deviation. Do not interpret as 95% CI. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1b, linear row |
| Configuration: MLP — scTab Table 1 | Protocol: scTab Table 1b: seeded fits plus donor bootstrap Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.7973 ± 0.0074 macro-f1 fraction · higher Uncertainty: type: source_printed_spread_semantics_conflicting; value: 0.0074; n: 4; note: Heading: confidence intervals; column: standard deviation. Do not interpret as 95% CI. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1b, mlp row |
| Configuration: scTab — scTab Table 1 | Protocol: scTab Table 1b: seeded fits plus donor bootstrap Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.8300 ± 0.0069 macro-f1 fraction · higher Uncertainty: type: source_printed_spread_semantics_conflicting; value: 0.0069; n: 4; note: Heading: confidence intervals; column: standard deviation. Do not interpret as 95% CI. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1b, sctab row |
| Configuration: XGBoost — scTab Table 1 | Protocol: scTab Table 1b: seeded fits plus donor bootstrap Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.8136 ± 0.0060 macro-f1 fraction · higher Uncertainty: type: source_printed_spread_semantics_conflicting; value: 0.0060; n: 4; note: Heading: confidence intervals; column: standard deviation. Do not interpret as 95% CI. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1b, xgboost row |
| Configuration: celltypist default parameters — scTab Table 6 | Protocol: scTab Table 1a: seeded model fits Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.6258 ± 0.0036 macro-f1 fraction · higher Uncertainty: type: standard_deviation; value: 0.0036; n: 4 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 6, celltypist, default parameters |
| Configuration: xgboost default parameters — scTab Table 6 | Protocol: scTab Table 1a: seeded model fits Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.5855 ± 0.0112 macro-f1 fraction · higher Uncertainty: type: standard_deviation; value: 0.0112; n: 4 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 6, xgboost, default parameters |
| Configuration: CellTypist — scTab Table 1 | Protocol: scTab Table 2 hardware-specific resources Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | ~2000 inference-throughput samples/second · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 2, celltypist, inference time |
| Configuration: CellTypist — scTab Table 1 | Protocol: scTab Table 2 hardware-specific resources Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | ~16h training-hours hours · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 2, celltypist, training time |
| Configuration: Optimized linear logistic regression — scTab Table 1 | Protocol: scTab Table 2 hardware-specific resources Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | ~29500 inference-throughput samples/second · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 2, linear, inference time |
| Configuration: Optimized linear logistic regression — scTab Table 1 | Protocol: scTab Table 2 hardware-specific resources Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | ~20h training-hours hours · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 2, linear, training time |
| Configuration: MLP — scTab Table 1 | Protocol: scTab Table 2 hardware-specific resources Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | ~21400 inference-throughput samples/second · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 2, mlp, inference time |
| Configuration: MLP — scTab Table 1 | Protocol: scTab Table 2 hardware-specific resources Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | ~29h training-hours hours · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 2, mlp, training time |
| Configuration: scTab — scTab Table 1 | Protocol: scTab Table 2 hardware-specific resources Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | ~10800 inference-throughput samples/second · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 2, sctab, inference time |
| Configuration: scTab — scTab Table 1 | Protocol: scTab Table 2 hardware-specific resources Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | ~33h training-hours hours · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 2, sctab, training time |
| Configuration: XGBoost — scTab Table 1 | Protocol: scTab Table 2 hardware-specific resources Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | ~4200 inference-throughput samples/second · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 2, xgboost, inference time |
| Configuration: XGBoost — scTab Table 1 | Protocol: scTab Table 2 hardware-specific resources Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | ~10h training-hours hours · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 2, xgboost, training time |
| Configuration: CellTypist — scTab Table 1 | Protocol: scTab Table 1a: seeded model fits Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.7304 ± 0.0015 macro-f1 fraction · higher Uncertainty: type: standard_deviation; value: 0.0015; n: 4 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1a, CellTypist row, macro F1 and number-of-runs columns |
| Configuration: CIForm — scTab Table 1 | Protocol: scTab Table 1a: seeded model fits Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.766 macro-f1 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1a, CIForm row, macro F1 and number-of-runs columns |
| Configuration: Optimized linear logistic regression — scTab Table 1 | Protocol: scTab Table 1a: seeded model fits Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.7848 ± 0.0001 macro-f1 fraction · higher Uncertainty: type: standard_deviation; value: 0.0001; n: 4 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1a, Optimized linear logistic regression row, macro F1 and number-of-runs columns |
| Configuration: MLP — scTab Table 1 | Protocol: scTab Table 1a: seeded model fits Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.7971 ± 0.0012 macro-f1 fraction · higher Uncertainty: type: standard_deviation; value: 0.0012; n: 5 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1a, MLP row, macro F1 and number-of-runs columns |
| Configuration: scGPT fine-tuned — scTab Table 1 | Protocol: scTab Table 1a: seeded model fits Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.749 macro-f1 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1a, scGPT fine-tuned row, macro F1 and number-of-runs columns |
| Configuration: scGPT frozen embeddings + logistic regression — scTab Table 1 | Protocol: scTab Table 1a: seeded model fits Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.7301 ± 0.0035 macro-f1 fraction · higher Uncertainty: type: standard_deviation; value: 0.0035; n: 5 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1a, scGPT frozen embeddings + logistic regression row, macro F1 and number-of-runs columns |
| Configuration: scTab — scTab Table 1 | Protocol: scTab Table 1a: seeded model fits Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.8295 ± 0.0007 macro-f1 fraction · higher Uncertainty: type: standard_deviation; value: 0.0007; n: 5 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1a, scTab row, macro F1 and number-of-runs columns |
| Configuration: UCE frozen embeddings + classifier — scTab Table 1 | Protocol: scTab Table 1a: seeded model fits Dataset: scTab processed CELLxGENE 2023-05-15 donor holdouts | 0.7611 ± 0.0018 macro-f1 fraction · higher Uncertainty: type: standard_deviation; value: 0.0018; n: 4 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported scTab supplementary comparison tables · Supplementary Table 1a, UCE frozen embeddings + classifier row, macro F1 and number-of-runs columns |
Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.label_semantics Cell Ontology adjustment permits more fine-grained predicted labels Context-only references | scTab official reproducibility repository No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 5ede7f2ba1f9618b86924f2ff587931de18f4ada | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.label_semantics Cell Ontology adjustment permits more fine-grained predicted labels Context-only references | scTab: Scaling cross-tissue single-cell annotation models No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41467-024-51059-5; published article XML retrieved 2026-09-30 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.split donor-based training/validation/test; not whole-study holdout Context-only references | scTab official reproducibility repository No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 5ede7f2ba1f9618b86924f2ff587931de18f4ada | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.split donor-based training/validation/test; not whole-study holdout Context-only references | scTab: Scaling cross-tissue single-cell annotation models No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41467-024-51059-5; published article XML retrieved 2026-09-30 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.version CELLxGENE 2023-05-15 scTab processed corpus Context-only references | scTab official reproducibility repository No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 5ede7f2ba1f9618b86924f2ff587931de18f4ada | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.version CELLxGENE 2023-05-15 scTab processed corpus Context-only references | scTab: Scaling cross-tissue single-cell annotation models No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41467-024-51059-5; published article XML retrieved 2026-09-30 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description 22.2 million cells, 5,052 donors, 164 cell types; primary datasets deduplicated, 10x-related assays only; rare types <5,000 cells or <30 donors excluded. Context-only references | scTab official reproducibility repository No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 5ede7f2ba1f9618b86924f2ff587931de18f4ada | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description 22.2 million cells, 5,052 donors, 164 cell types; primary datasets deduplicated, 10x-related assays only; rare types <5,000 cells or <30 donors excluded. Context-only references | scTab: Scaling cross-tissue single-cell annotation models No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41467-024-51059-5; published article XML retrieved 2026-09-30 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name scTab processed CELLxGENE 2023-05-15 donor holdouts Context-only references | scTab official reproducibility repository No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 5ede7f2ba1f9618b86924f2ff587931de18f4ada | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name scTab processed CELLxGENE 2023-05-15 donor holdouts Context-only references | scTab: Scaling cross-tissue single-cell annotation models No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41467-024-51059-5; published article XML retrieved 2026-09-30 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-30-e37e3ab1284d · Record review: source checked
Stable ID: ucc-research-data-sctab-census-20230515