Configuration

FLARE [MSAlign v2]

Exact Table 3 source implementation. Requires target molecular formula oracle.

Overview

Exact Table 3 source implementation. Requires target molecular formula oracle.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

3 evaluations · 9 results. Different protocols are not a single leaderboard.

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: FLARE [MSAlign v2]	Protocol: MSAlign v2 retrieval: massspecgym-formula-formula-oracle Dataset subset: MSAlign v2 massspecgym-formula-formula-oracle	32.8 ± 2.5% recall_at_1 percent · higher Uncertainty: type: standard_deviation; reported spread: 2.5; scope: Three random splitting seeds. Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FLARE massspecgym-formula-formula-oracle Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-formula block, R@1 row, FLARE column
Configuration: FLARE [MSAlign v2]	Protocol: MSAlign v2 retrieval: massspecgym-formula-formula-oracle Dataset subset: MSAlign v2 massspecgym-formula-formula-oracle	82.3 ± 1.5% recall_at_20 percent · higher Uncertainty: type: standard_deviation; reported spread: 1.5; scope: Three random splitting seeds. Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FLARE massspecgym-formula-formula-oracle Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-formula block, R@20 row, FLARE column
Configuration: FLARE [MSAlign v2]	Protocol: MSAlign v2 retrieval: massspecgym-formula-formula-oracle Dataset subset: MSAlign v2 massspecgym-formula-formula-oracle	61.8 ± 2.1% recall_at_5 percent · higher Uncertainty: type: standard_deviation; reported spread: 2.1; scope: Three random splitting seeds. Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FLARE massspecgym-formula-formula-oracle Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-formula block, R@5 row, FLARE column
Configuration: FLARE [MSAlign v2]	Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-oracle Dataset subset: MSAlign v2 massspecgym-mces-formula-oracle	28.4 ± 2.1% recall_at_1 percent · higher Uncertainty: type: standard_deviation; reported spread: 2.1; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FLARE massspecgym-mces-formula-oracle Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@1 row, FLARE column
Configuration: FLARE [MSAlign v2]	Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-oracle Dataset subset: MSAlign v2 massspecgym-mces-formula-oracle	82.8 ± 2.8% recall_at_20 percent · higher Uncertainty: type: standard_deviation; reported spread: 2.8; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FLARE massspecgym-mces-formula-oracle Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@20 row, FLARE column
Configuration: FLARE [MSAlign v2]	Protocol: MSAlign v2 retrieval: massspecgym-mces-formula-oracle Dataset subset: MSAlign v2 massspecgym-mces-formula-oracle	60.2 ± 1.4% recall_at_5 percent · higher Uncertainty: type: standard_deviation; reported spread: 1.4; scope: Two MCES validation/test-swapped variants per methods, despite blanket three-split table caption. Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FLARE massspecgym-mces-formula-oracle Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; massspecgym-mces block, R@5 row, FLARE column
Configuration: FLARE [MSAlign v2]	Protocol: MSAlign v2 retrieval: spectraverse-formula-oracle Dataset subset: MSAlign v2 spectraverse-formula-oracle	14.2 ± 1.1% recall_at_1 percent · higher Uncertainty: type: standard_deviation; reported spread: 1.1; scope: Three random splitting seeds. Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FLARE spectraverse-formula-oracle Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; spectraverse block, R@1 row, FLARE column
Configuration: FLARE [MSAlign v2]	Protocol: MSAlign v2 retrieval: spectraverse-formula-oracle Dataset subset: MSAlign v2 spectraverse-formula-oracle	60.3 ± 2.0% recall_at_20 percent · higher Uncertainty: type: standard_deviation; reported spread: 2.0; scope: Three random splitting seeds. Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FLARE spectraverse-formula-oracle Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; spectraverse block, R@20 row, FLARE column
Configuration: FLARE [MSAlign v2]	Protocol: MSAlign v2 retrieval: spectraverse-formula-oracle Dataset subset: MSAlign v2 spectraverse-formula-oracle	34.7 ± 2.6% recall_at_5 percent · higher Uncertainty: type: standard_deviation; reported spread: 2.6; scope: Three random splitting seeds. Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source FLARE spectraverse-formula-oracle Not reported Aggregation: Not reported MSAlign arXiv v2 Table 3 · Table 3 p7; spectraverse block, R@5 row, FLARE column

Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.

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Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-30-e37e3ab1284d
Property and statement	Original source and location	Review and provenance
Relationship: variant of uc20260930-model-flare Individual claims	MSAlign arXiv v2 Table 3 Original source ↗ Table 3 source column FLARE; Section 5.1 Baselines Version: 2605.19752v2, 25 September 2026 Retrieved: 2026-09-30	source checked automated source review · 2026-09-30T21:40:59.576893+00:00 Audit details Field: `links:variant_of:uc20260930-model-flare` Claim: uc20260930-config-family-405827f1f30d2c2f Source artifact SHA-256: `a31d1167b0ded72f64717881dd6cba0946a56b495d76f169d8e44115c3266fda` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

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Release 2026-09-30-e37e3ab1284d · Record review: source checked

1 source records and release history

MSAlign arXiv v2 Table 3 · Original source · 2605.19752v2, 25 September 2026

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Technical metadata and extraction receipts

Stable ID: uc20260930-msalign-v2-config-flare

areas: metabolomics
source locator: Table 3 column FLARE; Sections 3 and 5.1
missing metadata: checkpoint hash: unextracted
review: method: automated_source_review; reviewer: Codex experimental-use-case curation; date: 2026-09-30; reviewed at: 2026-09-30T21:40:59.576893+00:00; scope: Primary-source transcription and catalogue applicability audit; not human scientific review or independent experimental reproduction.
reported name: FLARE

Related records

variant of: FLARE
subject: FLARE [MSAlign v2] family identity
configuration: FLARE massspecgym-formula-formula-oracle
configuration: FLARE massspecgym-mces-formula-oracle
configuration: FLARE spectraverse-formula-oracle

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